Variant report

Variant	rs556166300
Chromosome Location	chr16:81469519-81469520
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81463200-81471600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr16:81466000-81471600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:81466200-81469600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr16:81466200-81471400	Weak transcription	Osteobl	bone
5	chr16:81466800-81471400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr16:81466800-81471600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:81467200-81471600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr16:81467200-81471800	Weak transcription	A549	lung
9	chr16:81467400-81471000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr16:81467400-81471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr16:81467600-81471000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr16:81467600-81471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:81467800-81470400	Weak transcription	Dnd41	blood
14	chr16:81467800-81471400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr16:81468400-81469800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr16:81469000-81469600	Enhancers	K562	blood
17	chr16:81469200-81470200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:81469400-81469600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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