Variant report

Variant	rs556178074
Chromosome Location	chr8:39918118-39918119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:39912165..39914251-chr8:39916476..39919468,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv967581	chr8:39917856-39928866	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39907600-39919000	Enhancers	HepG2	liver
2	chr8:39912800-39919800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:39913000-39939000	Weak transcription	Right Atrium	heart
4	chr8:39913400-39919400	Weak transcription	Aorta	Aorta
5	chr8:39914200-39918600	Weak transcription	Liver	Liver
6	chr8:39915200-39920800	Enhancers	Stomach Mucosa	stomach
7	chr8:39916400-39918400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:39916400-39918400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:39916400-39918400	Enhancers	Brain Angular Gyrus	brain
10	chr8:39916400-39918400	Enhancers	HUVEC	blood vessel
11	chr8:39916400-39918800	Enhancers	Small Intestine	intestine
12	chr8:39916400-39919200	Enhancers	Fetal Intestine Small	intestine
13	chr8:39916400-39919400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:39916400-39919400	Enhancers	Brain Hippocampus Middle	brain
15	chr8:39916400-39919400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr8:39916400-39919400	Enhancers	Brain Substantia Nigra	brain
17	chr8:39916400-39919400	Enhancers	Esophagus	oesophagus
18	chr8:39916400-39919800	Enhancers	Colonic Mucosa	Colon
19	chr8:39916400-39919800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr8:39916400-39920000	Enhancers	Duodenum Mucosa	Duodenum
21	chr8:39916400-39920000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr8:39916600-39918600	Weak transcription	Gastric	stomach
23	chr8:39916600-39919000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:39916600-39920000	Enhancers	Fetal Intestine Large	intestine
25	chr8:39916800-39918400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:39916800-39918600	Enhancers	Brain Anterior Caudate	brain
27	chr8:39916800-39919000	Enhancers	Stomach Smooth Muscle	stomach
28	chr8:39916800-39919400	Enhancers	Brain Cingulate Gyrus	brain
29	chr8:39917000-39918200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:39917200-39918200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:39917400-39918200	Enhancers	NHLF	lung
32	chr8:39917400-39918600	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr8:39917600-39918200	Enhancers	Colon Smooth Muscle	Colon
34	chr8:39917600-39918600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr8:39917600-39919000	Enhancers	Hela-S3	cervix
36	chr8:39917600-39920000	Enhancers	Pancreas	Pancrea
37	chr8:39917800-39918400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:39917800-39918600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:39917800-39918600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:39917800-39918800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr8:39917800-39918800	Enhancers	A549	lung
42	chr8:39917800-39919200	Weak transcription	Lung	lung

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