The 2.0 version of rSNPBase
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Variant report
Variant
rs556205941
Chromosome Location
chr3:143621845-143621846
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr3:143620792..143623032-chr3:143690321..143691839,2
MCF-7
breast:
2
chr3:143619574..143622269-chr3:143688723..143691584,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000181744
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv2646891
chr3:143620488-143621943
Enhancers Weak transcription
Chromatin interactive region
1 gene(s)
inside rSNPs
diseases
2
nsv877568
chr3:143621140-143992630
Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
34 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links