Variant report

Variant	rs556208684
Chromosome Location	chr1:161007654-161007655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:161006227..161009098-chr1:161086419..161089402,2	MCF-7	breast:
2	chr1:161007165..161010190-chr1:161058502..161060475,3	MCF-7	breast:
3	chr1:161007047..161009717-chr1:161100084..161102311,2	K562	blood:
4	chr1:160989087..160991942-chr1:161007144..161014242,6	K562	blood:
5	chr1:161006354..161009878-chr1:161042497..161045575,4	MCF-7	breast:
6	chr1:160988819..160994033-chr1:161005548..161011188,8	MCF-7	breast:
7	chr1:161007064..161010778-chr1:161101040..161104167,3	MCF-7	breast:
8	chr1:160989495..160995605-chr1:161004888..161010340,15	MCF-7	breast:
9	chr1:161006846..161009787-chr1:161123441..161125743,2	MCF-7	breast:
10	chr1:160988071..160992174-chr1:161007125..161014242,7	K562	blood:
11	chr1:161005808..161012985-chr1:161064732..161070101,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143222	Chromatin interaction
ENSG00000158769	Chromatin interaction
ENSG00000162755	Chromatin interaction
ENSG00000158796	Chromatin interaction
ENSG00000143256	Chromatin interaction
ENSG00000158793	Chromatin interaction
ENSG00000143217	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv947201	chr1:161006051-161013276	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv548059	chr1:161007326-161010791	Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160991200-161007800	Weak transcription	HSMMtube	muscle
2	chr1:160991800-161007800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:160992200-161008000	Weak transcription	HUVEC	blood vessel
4	chr1:160997200-161008000	Weak transcription	A549	lung
5	chr1:161001800-161007800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:161003000-161008200	Weak transcription	Osteobl	bone
7	chr1:161003200-161007800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:161003200-161008800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:161004000-161009200	Weak transcription	Hela-S3	cervix
10	chr1:161004200-161008000	Weak transcription	Spleen	Spleen
11	chr1:161005000-161009400	Weak transcription	K562	blood
12	chr1:161005600-161008000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:161005800-161008200	Weak transcription	Right Ventricle	heart
14	chr1:161005800-161008200	Weak transcription	NHLF	lung
15	chr1:161006000-161008000	Weak transcription	Brain Anterior Caudate	brain
16	chr1:161006000-161008200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:161006400-161008000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:161006600-161007800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:161006600-161008200	Weak transcription	Brain Angular Gyrus	brain
20	chr1:161007000-161007800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:161007000-161007800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:161007000-161007800	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr1:161007000-161007800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:161007000-161007800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr1:161007000-161007800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr1:161007000-161008000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:161007000-161008000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr1:161007000-161008000	Genic enhancers	Adipose Nuclei	Adipose
29	chr1:161007000-161008000	Enhancers	Liver	Liver
30	chr1:161007000-161009200	Weak transcription	NHDF-Ad	bronchial
31	chr1:161007000-161013400	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:161007200-161007800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:161007200-161007800	Enhancers	Primary T cells from cord blood	blood
34	chr1:161007200-161007800	Enhancers	Fetal Stomach	stomach
35	chr1:161007200-161008000	Enhancers	Fetal Thymus	thymus
36	chr1:161007200-161008000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr1:161007200-161008200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:161007200-161008200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr1:161007200-161008200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:161007200-161008200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:161007200-161008200	Enhancers	Fetal Heart	heart
42	chr1:161007200-161008200	Enhancers	Stomach Mucosa	stomach
43	chr1:161007200-161008800	Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr1:161007200-161009000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr1:161007400-161007800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
46	chr1:161007400-161007800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
47	chr1:161007400-161007800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr1:161007400-161007800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr1:161007400-161007800	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr1:161007400-161007800	Genic enhancers	Placenta	Placenta

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