Variant report

Variant	rs556219713
Chromosome Location	chr1:172148162-172148163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172146908..172150355-chr1:172151675..172155662,5	MCF-7	breast:
2	chr1:172147006..172149581-chr1:172326946..172329408,2	MCF-7	breast:
3	chr1:172140818..172144091-chr1:172144720..172148796,3	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:172128400-172149800	Weak transcription	Aorta	Aorta
3	chr1:172132800-172150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:172138400-172149800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172142200-172149600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:172145800-172150000	Weak transcription	Psoas Muscle	Psoas
7	chr1:172146000-172149000	Weak transcription	Fetal Kidney	kidney
8	chr1:172146400-172149600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:172146600-172150200	Enhancers	Stomach Mucosa	stomach
10	chr1:172146800-172148400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:172146800-172152000	Enhancers	Fetal Intestine Small	intestine
12	chr1:172147200-172149000	Enhancers	Fetal Lung	lung
13	chr1:172147400-172154000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:172147600-172149600	Enhancers	Small Intestine	intestine
15	chr1:172147600-172151200	Enhancers	Fetal Intestine Large	intestine
16	chr1:172147800-172148200	Enhancers	Brain Hippocampus Middle	brain
17	chr1:172147800-172148200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr1:172147800-172148400	Enhancers	Brain Angular Gyrus	brain
19	chr1:172147800-172148400	Enhancers	Ovary	ovary
20	chr1:172148000-172148200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr1:172148000-172148200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr1:172148000-172148200	Enhancers	Fetal Heart	heart
23	chr1:172148000-172148200	Enhancers	Fetal Stomach	stomach
24	chr1:172148000-172149000	Weak transcription	GM12878-XiMat	blood
25	chr1:172148000-172149400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr1:172148000-172149800	Enhancers	Colon Smooth Muscle	Colon

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