Variant report

Variant	rs556236039
Chromosome Location	chr6:140365462-140365463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140363202..140365064-chr6:140365355..140367836,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv970352	chr6:140363091-140366380	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3395457	chr6:140364559-140368757	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140351400-140366600	Weak transcription	Aorta	Aorta
2	chr6:140353600-140365600	Weak transcription	Left Ventricle	heart
3	chr6:140358200-140366600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:140360800-140366400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:140361200-140365800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:140361200-140366800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:140361200-140366800	Enhancers	HMEC	breast
8	chr6:140361200-140367000	Enhancers	NHEK	skin
9	chr6:140361600-140365600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:140362200-140366400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:140362400-140366200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:140362800-140365600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr6:140363000-140366400	Enhancers	HSMM	muscle
14	chr6:140363200-140365600	Enhancers	NHLF	lung
15	chr6:140363200-140366800	Enhancers	Hela-S3	cervix
16	chr6:140363400-140370800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:140363400-140370800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:140363600-140365600	Enhancers	A549	lung
19	chr6:140364000-140365600	Enhancers	HSMMtube	muscle
20	chr6:140364000-140367200	Enhancers	NHDF-Ad	bronchial
21	chr6:140364200-140365600	Enhancers	NH-A	brain
22	chr6:140364200-140365800	Enhancers	Osteobl	bone
23	chr6:140364200-140366600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:140364400-140365600	Enhancers	Fetal Intestine Small	intestine
25	chr6:140364400-140365600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:140364400-140365800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:140364400-140365800	Enhancers	Fetal Intestine Large	intestine
28	chr6:140364400-140366800	Enhancers	Fetal Heart	heart
29	chr6:140364400-140367000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:140364400-140367600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:140364800-140366600	Weak transcription	Small Intestine	intestine
32	chr6:140365000-140366400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:140365000-140366800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:140365200-140365800	Enhancers	Monocytes-CD14+_RO01746	blood

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