Variant report

Variant	rs556261600
Chromosome Location	chr11:85888937-85888938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85868370..85870226-chr11:85888178..85889880,2	K562	blood:
2	chr11:85888440..85890283-chr11:85910710..85912765,2	K562	blood:
3	chr11:85887077..85889450-chr11:85892380..85895254,3	MCF-7	breast:
4	chr11:85887352..85890234-chr11:85905723..85909475,3	K562	blood:
5	chr11:85868596..85870226-chr11:85886997..85889880,2	K562	blood:

Variant related genes	Relation type
ENSG00000254502	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040400	chr11:85883303-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1043422	chr11:85883840-85898809	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1049658	chr11:85885461-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1049881	chr11:85885684-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv555645	chr11:85886994-85898770	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv2760233	chr11:85887957-85899812	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv8851	chr11:85888397-85899580	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv999880	chr11:85888638-85902307	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	esv3471552	chr11:85888769-85899564	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85882600-85890800	Enhancers	Placenta	Placenta
2	chr11:85882600-85891600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:85883200-85891400	Weak transcription	Thymus	Thymus
4	chr11:85883600-85889000	Enhancers	Osteobl	bone
5	chr11:85883800-85890400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:85883800-85890800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:85885200-85895200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:85886000-85890200	Weak transcription	Ovary	ovary
9	chr11:85886000-85890800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:85886000-85891600	Weak transcription	Brain Substantia Nigra	brain
11	chr11:85886000-85891600	Weak transcription	Fetal Thymus	thymus
12	chr11:85886000-85894000	Weak transcription	Esophagus	oesophagus
13	chr11:85886000-85894000	Weak transcription	Pancreas	Pancrea
14	chr11:85886000-85903000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:85886200-85889800	Weak transcription	Small Intestine	intestine
16	chr11:85886200-85890400	Weak transcription	Lung	lung
17	chr11:85886200-85893800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:85886400-85890200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:85886800-85889000	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:85886800-85894000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:85887000-85889600	Weak transcription	NHDF-Ad	bronchial
22	chr11:85887000-85889600	Weak transcription	NHLF	lung
23	chr11:85887000-85890400	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:85887000-85891600	Weak transcription	Brain Angular Gyrus	brain
25	chr11:85887000-85892800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:85887000-85894000	Weak transcription	Right Atrium	heart
27	chr11:85887200-85894200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr11:85887200-85898000	Weak transcription	Brain Anterior Caudate	brain
29	chr11:85887600-85891400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:85887800-85889600	Weak transcription	Primary B cells from cord blood	blood
31	chr11:85887800-85892400	Enhancers	Adipose Nuclei	Adipose
32	chr11:85887800-85893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:85888000-85889200	Weak transcription	HUVEC	blood vessel
34	chr11:85888000-85891400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:85888000-85893400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:85888000-85894000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:85888200-85890400	Weak transcription	Liver	Liver
38	chr11:85888200-85890400	Weak transcription	HepG2	liver
39	chr11:85888400-85889000	Enhancers	Psoas Muscle	Psoas
40	chr11:85888600-85889600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:85888600-85893400	Weak transcription	Fetal Intestine Large	intestine
42	chr11:85888800-85889800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:85888800-85890200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:85888800-85890200	Weak transcription	Left Ventricle	heart
45	chr11:85888800-85890200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:85888800-85893000	Weak transcription	Fetal Intestine Small	intestine
47	chr11:85888800-85893400	Weak transcription	HMEC	breast
48	chr11:85888800-85893600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:85888800-85893800	Enhancers	K562	blood
50	chr11:85888800-85894000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links