Variant report

Variant	rs556346397
Chromosome Location	chr9:98512797-98512798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	esv3339519	chr9:98512656-98515504	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98510400-98514200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98511600-98513200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr9:98511600-98514000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:98511800-98513200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr9:98511800-98513200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:98511800-98513200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr9:98511800-98513600	Enhancers	Fetal Thymus	thymus
8	chr9:98511800-98514000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr9:98511800-98514000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:98511800-98514000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr9:98512000-98513000	Enhancers	Primary T cells from cord blood	blood
12	chr9:98512000-98513000	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr9:98512000-98514200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:98512200-98513800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr9:98512200-98515800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:98512400-98513000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:98512400-98513600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr9:98512400-98513800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:98512600-98512800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:98512600-98512800	Enhancers	Colonic Mucosa	Colon
21	chr9:98512600-98513000	Enhancers	HepG2	liver
22	chr9:98512600-98513600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
23	chr9:98512600-98513600	Enhancers	GM12878-XiMat	blood

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