Variant report

Variant	rs556350060
Chromosome Location	chr1:59156103-59156104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59154836..59157699-chr1:59248547..59250761,2	MCF-7	breast:
2	chr1:59152225..59156137-chr1:59164048..59166851,4	MCF-7	breast:
3	chr1:59155488..59157004-chr1:59164254..59165910,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162601	Chromatin interaction
ENSG00000177606	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv822810	chr1:59155367-59156113	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv822821	chr1:59155367-59156322	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv822832	chr1:59155367-59156484	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv822843	chr1:59155367-59156536	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv822854	chr1:59155367-59156589	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv822865	chr1:59155367-59156804	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv819698	chr1:59155397-59157255	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv822876	chr1:59155504-59156804	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59118200-59163400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:59119800-59162200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:59119800-59163200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:59121000-59161200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:59121400-59161000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:59121600-59161200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:59121600-59161200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:59122400-59159400	Weak transcription	Right Ventricle	heart
9	chr1:59123800-59161800	Strong transcription	Dnd41	blood
10	chr1:59124000-59156600	Weak transcription	Spleen	Spleen
11	chr1:59125000-59162200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:59125600-59161200	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr1:59129200-59161000	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr1:59131200-59161000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:59131200-59161000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:59139400-59156200	Weak transcription	Psoas Muscle	Psoas
17	chr1:59139600-59162800	Weak transcription	Fetal Brain Male	brain
18	chr1:59139800-59156200	Weak transcription	Lung	lung
19	chr1:59139800-59159000	Weak transcription	Small Intestine	intestine
20	chr1:59139800-59162000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:59140200-59158800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:59140400-59157800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr1:59141200-59156200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:59141200-59158800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:59141800-59158600	Weak transcription	NHLF	lung
26	chr1:59143600-59160600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:59144600-59161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:59146600-59163200	Strong transcription	Osteobl	bone
29	chr1:59147200-59156400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr1:59148000-59161000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:59148000-59164000	Weak transcription	A549	lung
32	chr1:59148200-59156200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:59148200-59157800	Weak transcription	Colonic Mucosa	Colon
34	chr1:59148200-59164400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr1:59149200-59161000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:59149400-59156400	Weak transcription	Brain Germinal Matrix	brain
37	chr1:59149400-59160200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:59149800-59156400	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:59149800-59157800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr1:59149800-59158000	Weak transcription	Fetal Lung	lung
41	chr1:59149800-59160000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:59150000-59157000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:59150000-59158000	Weak transcription	Fetal Kidney	kidney
44	chr1:59151000-59163200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:59151200-59157800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:59151400-59161000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr1:59151400-59161200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr1:59151400-59161400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr1:59151600-59160000	Strong transcription	NHDF-Ad	bronchial
50	chr1:59151800-59156200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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