Variant report

Variant	rs556354396
Chromosome Location	chr5:177847998-177847999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv883213	chr5:177811754-177947771	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3377943	chr5:177846371-177848919	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3361909	chr5:177846496-177848794	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3338238	chr5:177847046-177848194	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv15459	chr5:177847905-177852613	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177840000-177855000	Weak transcription	Right Atrium	heart
2	chr5:177841200-177854400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:177842400-177848000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:177844000-177849800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:177844400-177849000	Enhancers	Fetal Thymus	thymus
6	chr5:177844800-177848600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:177844800-177851200	Weak transcription	Fetal Lung	lung
8	chr5:177845600-177849600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:177845800-177849600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:177846000-177849400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:177846000-177849600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:177846200-177848000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:177846200-177849400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:177846200-177849600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:177846200-177851800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:177846400-177848800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:177846400-177849600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:177846600-177848000	Enhancers	Fetal Muscle Leg	muscle
19	chr5:177846600-177848800	Weak transcription	Thymus	Thymus
20	chr5:177846600-177849200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr5:177846600-177849600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:177846600-177856000	Weak transcription	Gastric	stomach
23	chr5:177846800-177848000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:177847000-177848000	Enhancers	Fetal Stomach	stomach
25	chr5:177847000-177849400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr5:177847200-177848200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr5:177847200-177854600	Weak transcription	Fetal Kidney	kidney
28	chr5:177847600-177848000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr5:177847600-177848400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:177847800-177848000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr5:177847800-177848000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr5:177847800-177848200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr5:177847800-177849400	Enhancers	H9 Cell Line	embryonic stem cell
34	chr5:177847800-177850400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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