Variant report

Variant	rs556359425
Chromosome Location	chr6:90834-90835
allele	-/AG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr6:90700-90991	K562	blood:	n/a	n/a
2	SPI1	chr6:90684-90957	GM12878	blood:	n/a	n/a
3	PAX5	chr6:90776-90937	GM12878	blood:	n/a	n/a
4	CTCF	chr6:90689-91023	A549	lung:	n/a	chr6:90883-90904
5	CTCF	chr6:90677-91036	K562	blood:	n/a	chr6:90883-90904
6	BATF	chr6:90689-90981	GM12878	blood:	n/a	n/a
7	RAD21	chr6:90816-91019	GM12878	blood:	n/a	chr6:90886-90905
8	PAX5	chr6:90789-90993	GM12878	blood:	n/a	n/a
9	USF1	chr6:90805-90943	HepG2	liver:	n/a	n/a
10	SP1	chr6:90759-91356	GM12878	blood:	n/a	n/a
11	PAX5	chr6:90661-91059	GM12878	blood:	n/a	n/a
12	JUND	chr6:90784-90981	HepG2	liver:	n/a	n/a
13	CTCF	chr6:90700-90850	HMF	breast:	n/a	n/a
14	CTCF	chr6:90765-91025	K562	blood:	n/a	chr6:90883-90904
15	CTCF	chr6:90720-90870	RPTEC	kidney:	n/a	n/a
16	GATA2	chr6:90582-91643	K562	blood:	n/a	n/a
17	POU2F2	chr6:90786-90965	GM12878	blood:	n/a	n/a
18	IRF4	chr6:90681-91005	GM12878	blood:	n/a	n/a
19	SPI1	chr6:90643-90958	GM12891	blood:	n/a	n/a
20	SPI1	chr6:90677-90971	K562	blood:	n/a	n/a
21	CTCF	chr6:90720-90870	AG10803	skin:	n/a	n/a
22	FOSL2	chr6:90701-90929	HepG2	liver:	n/a	n/a
23	CTCF	chr6:90829-90895	HepG2	liver:	n/a	n/a
24	CTCF	chr6:90700-90850	HEEpiC	esophagus:	n/a	n/a
25	RAD21	chr6:90814-91027	Hela-S3	cervix:	n/a	chr6:90886-90905
26	RXRA	chr6:90727-90992	HepG2	liver:	n/a	n/a
27	CTCF	chr6:90830-91015	K562	blood:	n/a	chr6:90883-90904
28	GABPA	chr6:90709-90953	Hela-S3	cervix:	n/a	n/a
29	USF1	chr6:90803-90960	HepG2	liver:	n/a	n/a
30	PAX5	chr6:90788-90954	GM12878	blood:	n/a	n/a
31	CTCF	chr6:90700-90850	RPTEC	kidney:	n/a	n/a
32	RXRA	chr6:90636-91049	GM12878	blood:	n/a	n/a
33	CTCF	chr6:90697-90988	A549	lung:	n/a	chr6:90883-90904
34	SPI1	chr6:90693-90946	GM12878	blood:	n/a	n/a
35	SP1	chr6:90696-90971	GM12878	blood:	n/a	n/a
36	TAF1	chr6:90763-90943	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr6:90817-91027	GM12878	blood:	n/a	chr6:90883-90904
38	SPI1	chr6:90653-90949	GM12891	blood:	n/a	n/a
39	CTCF	chr6:90715-91021	A549	lung:	n/a	chr6:90883-90904
40	RAD21	chr6:90744-90895	GM12878	blood:	n/a	n/a
41	RAD21	chr6:90753-90894	GM12878	blood:	n/a	n/a
42	SMC3	chr6:90821-91021	Hela-S3	cervix:	n/a	n/a
43	POU2F2	chr6:90628-91018	GM12878	blood:	n/a	n/a
44	CTCF	chr6:90783-90984	K562	blood:	n/a	chr6:90883-90904
45	CTCF	chr6:90663-91014	A549	lung:	n/a	chr6:90883-90904
46	SMC3	chr6:90831-91012	GM12878	blood:	n/a	n/a
47	FOXA1	chr6:90699-91142	HepG2	liver:	n/a	n/a
48	SPI1	chr6:90744-90973	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000271530	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970198	chr6:60001-122946	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv10796	chr6:60001-126418	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv427742	chr6:60001-146701	Inactive region	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv428134	chr6:60001-653718	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2758034	chr6:60001-775274	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	esv2759401	chr6:60001-775274	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	esv20531	chr6:60031-149517	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv820764	chr6:60031-155228	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv969341	chr6:62000-102888	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3439055	chr6:86852-92050	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3388723	chr6:87852-90850	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3386561	chr6:87852-91150	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3474406	chr6:89052-93850	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv3474407	chr6:89052-93850	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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