Variant report

Variant	rs556373642
Chromosome Location	chr11:107985513-107985514
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107974563..107976486-chr11:107983506..107986332,2	K562	blood:
2	chr11:107984261..107988024-chr11:107989192..107992073,3	K562	blood:
3	chr11:107984587..107986286-chr11:107991544..107993666,2	K562	blood:
4	chr11:107974288..107976486-chr11:107982960..107986332,3	K562	blood:
5	chr11:107878617..107881066-chr11:107984671..107987003,3	K562	blood:

Variant related genes	Relation type
ENSG00000075239	Chromatin interaction
ENSG00000255467	Chromatin interaction
ENSG00000166266	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3425182	chr11:107985182-107985537	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107946600-107986000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:107953200-107991600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:107953600-107986000	Weak transcription	Pancreas	Pancrea
4	chr11:107955800-107991800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:107966200-107986000	Weak transcription	Brain Substantia Nigra	brain
6	chr11:107966400-107992000	Weak transcription	Fetal Brain Male	brain
7	chr11:107966600-107986000	Weak transcription	HMEC	breast
8	chr11:107967000-107991400	Weak transcription	A549	lung
9	chr11:107968200-107986000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:107968200-107986800	Weak transcription	Colonic Mucosa	Colon
11	chr11:107968200-107992000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:107968600-107986000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:107969000-107991600	Weak transcription	Hela-S3	cervix
14	chr11:107969200-107986000	Weak transcription	NHLF	lung
15	chr11:107969200-107986200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:107969200-107991800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:107970600-107991600	Weak transcription	HepG2	liver
18	chr11:107972200-107986000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:107972400-107986400	Weak transcription	NHEK	skin
20	chr11:107972400-107991400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr11:107972400-107991600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:107972400-107992000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:107972600-107992200	Weak transcription	Gastric	stomach
24	chr11:107973200-107986400	Weak transcription	Ovary	ovary
25	chr11:107973400-107991800	Weak transcription	Primary T cells from cord blood	blood
26	chr11:107973600-107985600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:107973600-107985600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:107973600-107986000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:107973600-107986000	Weak transcription	NH-A	brain
30	chr11:107973600-107991600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:107973600-107991800	Weak transcription	Primary B cells from cord blood	blood
32	chr11:107973600-107991800	Weak transcription	Brain Germinal Matrix	brain
33	chr11:107973600-107991800	Weak transcription	Fetal Brain Female	brain
34	chr11:107973800-107986000	Weak transcription	Aorta	Aorta
35	chr11:107973800-107986000	Weak transcription	Brain Anterior Caudate	brain
36	chr11:107973800-107986000	Weak transcription	Small Intestine	intestine
37	chr11:107973800-107986200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:107973800-107986400	Weak transcription	Adipose Nuclei	Adipose
39	chr11:107973800-107986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:107973800-107991600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:107973800-107991800	Weak transcription	Lung	lung
42	chr11:107973800-107992000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:107974000-107985600	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:107974000-107986000	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:107974200-107986000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:107974200-107991800	Weak transcription	Thymus	Thymus
47	chr11:107974600-107991800	Weak transcription	HUVEC	blood vessel
48	chr11:107974800-107992000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:107975200-107986000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:107975400-107985600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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