The 2.0 version of rSNPBase

Variant report

Variant rs556380453
Chromosome Location chr5:178370391-178370392
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:178353800-178374800 ZNF genes & repeats Liver Liver
2 chr5:178366400-178372600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr5:178366800-178370400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr5:178367000-178370400 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
5 chr5:178367000-178374600 ZNF genes & repeats Spleen Spleen
6 chr5:178367400-178370600 ZNF genes & repeats Fetal Intestine Large intestine
7 chr5:178368400-178370400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
8 chr5:178368800-178370400 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr5:178368800-178377000 Weak transcription Psoas Muscle Psoas
10 chr5:178369000-178371000 Weak transcription Placenta Amnion Placenta Amnion
11 chr5:178369000-178371200 Weak transcription Brain Angular Gyrus brain
12 chr5:178369000-178371200 Weak transcription Fetal Kidney kidney
13 chr5:178369000-178371200 Weak transcription Left Ventricle heart
14 chr5:178369000-178372800 Weak transcription Brain Inferior Temporal Lobe brain
15 chr5:178369000-178373800 Weak transcription Brain Substantia Nigra brain
16 chr5:178369000-178374000 Weak transcription Osteobl bone
17 chr5:178369000-178374400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
18 chr5:178369000-178378400 Weak transcription NHDF-Ad bronchial
19 chr5:178369000-178378800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
20 chr5:178369000-178380200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr5:178369000-178384800 ZNF genes & repeats Fetal Stomach stomach
22 chr5:178369200-178371200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr5:178369200-178371200 Weak transcription Brain Cingulate Gyrus brain
24 chr5:178369200-178371800 Weak transcription Fetal Heart heart
25 chr5:178369200-178372200 Weak transcription Right Ventricle heart
26 chr5:178369200-178373000 Weak transcription Colon Smooth Muscle Colon
27 chr5:178369400-178374800 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
28 chr5:178369400-178418200 ZNF genes & repeats Fetal Brain Female brain
29 chr5:178369600-178370600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr5:178369600-178370600 ZNF genes & repeats Fetal Brain Male brain
31 chr5:178369600-178370600 ZNF genes & repeats Fetal Muscle Leg muscle
32 chr5:178369600-178370800 ZNF genes & repeats Brain Hippocampus Middle brain
33 chr5:178369600-178372200 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr5:178369600-178373200 ZNF genes & repeats Fetal Lung lung
35 chr5:178369600-178373600 ZNF genes & repeats Brain Germinal Matrix brain
36 chr5:178369600-178374400 Strong transcription Stomach Smooth Muscle stomach
37 chr5:178369600-178377400 Strong transcription Fetal Muscle Trunk muscle
38 chr5:178369800-178373600 Weak transcription Rectal Smooth Muscle rectum
39 chr5:178370000-178370600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
40 chr5:178370000-178376200 Weak transcription Placenta Placenta
41 chr5:178370000-178378400 Weak transcription Muscle Satellite Cultured Cells --
42 chr5:178370200-178370400 ZNF genes & repeats Pancreas Pancrea
43 chr5:178370200-178370600 ZNF genes & repeats Brain Dorsolateral Prefrontal Cortex brain
44 chr5:178370200-178371000 ZNF genes & repeats Ovary ovary
45 chr5:178370200-178374200 Strong transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015