Variant report

Variant	rs556396258
Chromosome Location	chr6:139771387-139771388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139765322..139769157-chr6:139769413..139772627,5	K562	blood:
3	chr6:139770584..139773183-chr6:139828829..139830952,2	K562	blood:
4	chr6:139769744..139772558-chr6:139778063..139781285,3	K562	blood:
5	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
6	chr6:139762168..139766688-chr6:139768523..139772512,5	K562	blood:
7	chr6:139768879..139771871-chr6:139917556..139920182,2	K562	blood:
8	chr6:139769856..139771450-chr6:139849684..139852218,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518835	chr6:139770067-139800892	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139765200-139772800	Weak transcription	HSMMtube	muscle
2	chr6:139767600-139771600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:139768200-139771400	Flanking Active TSS	K562	blood
4	chr6:139768200-139771800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:139768200-139774000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:139768400-139771400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:139768800-139771600	Weak transcription	Fetal Kidney	kidney
8	chr6:139769000-139772000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:139769200-139773400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:139769400-139773200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:139769600-139773400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:139770000-139771400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:139770200-139771400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:139770200-139771800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:139770200-139771800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:139770400-139771400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:139770400-139771400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:139770400-139771400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:139770400-139771400	Enhancers	Osteobl	bone
20	chr6:139770400-139771800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:139770600-139771400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:139770600-139771400	Enhancers	NHDF-Ad	bronchial
23	chr6:139770600-139773400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:139770600-139773600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:139770800-139771400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:139771200-139771400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:139771200-139771400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:139771200-139771400	Enhancers	HUVEC	blood vessel
29	chr6:139771200-139771600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:139771200-139771600	Enhancers	HSMM	muscle
31	chr6:139771200-139772200	Enhancers	Ovary	ovary

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