Variant report

Variant	rs556426905
Chromosome Location	chr11:67187994-67187995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:58)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:58 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:67187907-67188792	GM12878	blood:	n/a	n/a
2	BCLAF1	chr11:67187937-67188334	GM12878	blood:	n/a	n/a
3	MAX	chr11:67187955-67188967	MCF-7	breast:	n/a	n/a
4	MAX	chr11:67187934-67188859	ECC-1	luminal epithelium:	n/a	n/a
5	MAZ	chr11:67187838-67189126	IMR90	lung:	n/a	n/a
6	UBTF	chr11:67187953-67188779	K562	blood:	n/a	n/a
7	MAX	chr11:67187721-67188937	K562	blood:	n/a	n/a
8	POLR2A	chr11:67187975-67188923	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr11:67187743-67188977	A549	lung:	n/a	n/a
10	MXI1	chr11:67187726-67189337	SK-N-SH	brain:	n/a	n/a
11	MAX	chr11:67187884-67189089	HepG2	liver:	n/a	n/a
12	JUN	chr11:67187936-67188950	K562	blood:	n/a	chr11:67188032-67188041
13	POLR2A	chr11:67187947-67188750	GM12878	blood:	n/a	n/a
14	POLR2A	chr11:67187430-67188071	K562	blood:	n/a	n/a
15	TCF12	chr11:67187925-67188289	GM12878	blood:	n/a	n/a
16	POLR2A	chr11:67187992-67189070	K562	blood:	n/a	n/a
17	POLR2A	chr11:67187899-67189007	MCF-7	breast:	n/a	n/a
18	MAX	chr11:67187872-67188903	HepG2	liver:	n/a	n/a
19	RUNX3	chr11:67187889-67188265	GM12878	blood:	n/a	n/a
20	MYC	chr11:67187952-67188841	K562	blood:	n/a	n/a
21	POLR2A	chr11:67187984-67188740	Hela-S3	cervix:	n/a	n/a
22	HCFC1	chr11:67187834-67189352	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr11:67187889-67188841	GM12892	blood:	n/a	n/a
24	MXI1	chr11:67187768-67189325	IMR90	lung:	n/a	n/a
25	ZBTB7A	chr11:67187924-67188963	K562	blood:	n/a	chr11:67188773-67188780
26	POLR2A	chr11:67187990-67188845	HUVEC	blood vessel:	n/a	n/a
27	HMGN3	chr11:67187775-67189010	K562	blood:	n/a	n/a
28	RCOR1	chr11:67187823-67189285	IMR90	lung:	n/a	n/a
29	MAX	chr11:67187990-67188780	SK-N-SH	brain:	n/a	n/a
30	YY1	chr11:67187963-67188962	K562	blood:	n/a	chr11:67188863-67188877 chr11:67188751-67188765
31	POLR2A	chr11:67187950-67189092	ECC-1	luminal epithelium:	n/a	n/a
32	EGR1	chr11:67187942-67188135	GM12878	blood:	n/a	chr11:67188016-67188030 chr11:67188025-67188038
33	YY1	chr11:67187979-67188295	GM12878	blood:	n/a	n/a
34	POLR2A	chr11:67186803-67188182	SK-N-MC	brain:	n/a	n/a
35	MAZ	chr11:67187990-67188960	K562	blood:	n/a	n/a
36	MYC	chr11:67187994-67188831	NB4	blood:	n/a	n/a
37	HEY1	chr11:67187803-67188786	K562	blood:	n/a	n/a
38	POLR2A	chr11:67187718-67189008	H1-hESC	embryonic stem cell:	n/a	n/a
39	SMARCB1	chr11:67187994-67188656	Hela-S3	cervix:	n/a	n/a
40	EBF1	chr11:67187953-67188308	GM12878	blood:	n/a	n/a
41	MYC	chr11:67187981-67188845	K562	blood:	n/a	n/a
42	MAX	chr11:67187938-67188864	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr11:67186845-67189041	K562	blood:	n/a	n/a
44	GABPA	chr11:67187968-67188585	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr11:67187958-67188739	GM12878	blood:	n/a	n/a
46	TAF1	chr11:67187975-67188855	HepG2	liver:	n/a	n/a
47	POLR2A	chr11:67187046-67189184	K562	blood:	n/a	n/a
48	POLR2A	chr11:67187955-67189350	HepG2	liver:	n/a	n/a
49	EGR1	chr11:67187921-67188244	K562	blood:	n/a	chr11:67188016-67188030 chr11:67188025-67188038
50	POLR2A	chr11:67187935-67188861	HL-60	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67187290..67189722-chr11:67250373..67251986,2	K562	blood:
2	chr11:67186666..67191064-chr11:67273296..67275634,4	K562	blood:
3	chr11:67140365..67142235-chr11:67187974..67189991,2	K562	blood:
4	chr11:67182567..67190511-chr11:67270739..67276166,13	MCF-7	breast:
5	chr11:67187544..67192614-chr11:67201349..67205044,6	K562	blood:
6	chr11:67186666..67189529-chr11:67272076..67275550,4	K562	blood:
7	chr11:67185549..67189385-chr11:67208691..67212904,6	K562	blood:
8	chr11:67187592..67190127-chr11:67230614..67234165,3	K562	blood:
9	chr11:67147040..67148988-chr11:67186808..67188399,2	K562	blood:
10	chr11:67119033..67122416-chr11:67186034..67189246,4	K562	blood:
11	chr11:67187671..67190437-chr11:67260669..67262502,2	MCF-7	breast:
12	chr11:67123845..67125865-chr11:67186294..67189193,2	K562	blood:
13	chr11:67186236..67188568-chr11:67242107..67244785,2	MCF-7	breast:

No data

Variant related genes	Relation type
CARNS1	TF binding region
ENSG00000172663	Chromatin interaction
ENSG00000256514	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000172725	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000110711	Chromatin interaction
ENSG00000255949	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000175505	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
3	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
5	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
6	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
8	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
9	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
10	nsv897805	chr11:67155210-67283891	ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
11	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
12	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
13	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
14	nsv897809	chr11:67156875-67276235	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
15	nsv555254	chr11:67164495-67288594	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
16	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
17	nsv897810	chr11:67166310-67196237	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
18	nsv897811	chr11:67166984-67218909	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
19	nsv897812	chr11:67174597-67198887	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
20	nsv897813	chr11:67175692-67283891	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
21	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
22	nsv555255	chr11:67177797-67191449	Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	esv1847460	chr11:67182600-67219337	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	nsv524096	chr11:67186000-67224988	Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
25	nsv468604	chr11:67186000-67283891	Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
26	nsv555256	chr11:67186000-67283891	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
27	esv1811233	chr11:67186271-67193108	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
28	esv3403555	chr11:67187476-67189674	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67182600-67188000	Enhancers	Spleen	Spleen
2	chr11:67183000-67188000	Enhancers	Esophagus	oesophagus
3	chr11:67183000-67188000	Enhancers	Fetal Lung	lung
4	chr11:67183200-67188000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:67183400-67188000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr11:67183400-67188000	Enhancers	Left Ventricle	heart
7	chr11:67183400-67188200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr11:67183400-67188200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr11:67183600-67188000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:67183600-67188000	Enhancers	Right Atrium	heart
11	chr11:67183600-67188200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr11:67183800-67188000	Enhancers	Gastric	stomach
13	chr11:67184200-67188200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr11:67184200-67188800	Enhancers	Placenta	Placenta
15	chr11:67184400-67188000	Enhancers	Psoas Muscle	Psoas
16	chr11:67184800-67188000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:67184800-67188200	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr11:67185600-67188000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr11:67185600-67188600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr11:67186000-67188000	Enhancers	HMEC	breast
21	chr11:67186000-67188200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr11:67186200-67188000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
23	chr11:67186200-67188000	Enhancers	Lung	lung
24	chr11:67186200-67188200	Flanking Active TSS	Fetal Muscle Trunk	muscle
25	chr11:67186200-67188200	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr11:67186200-67188200	Flanking Active TSS	Dnd41	blood
27	chr11:67186200-67188200	Flanking Active TSS	HSMMtube	muscle
28	chr11:67186400-67188000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:67186400-67188000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:67186400-67188000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr11:67186400-67188200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr11:67186400-67188200	Flanking Active TSS	Thymus	Thymus
33	chr11:67186400-67189200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr11:67186600-67188000	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr11:67186600-67188200	Enhancers	Stomach Mucosa	stomach
36	chr11:67186800-67188800	Enhancers	Fetal Intestine Large	intestine
37	chr11:67187000-67188000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:67187200-67188000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:67187400-67188000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:67187400-67188200	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr11:67187400-67188200	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr11:67187400-67188200	Enhancers	Fetal Heart	heart
43	chr11:67187400-67188200	Flanking Bivalent TSS/Enh	HepG2	liver
44	chr11:67187600-67188000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
45	chr11:67187600-67188000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
46	chr11:67187600-67188000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr11:67187600-67188000	Enhancers	Aorta	Aorta
48	chr11:67187600-67188000	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr11:67187600-67188000	Flanking Active TSS	Fetal Brain Female	brain
50	chr11:67187600-67188000	Flanking Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links