Variant report

Variant	rs55645020
Chromosome Location	chr2:111983470-111983471
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:111982529..111984257-chr2:111985770..111989287,4	K562	blood:
2	chr2:111978052..111980710-chr2:111981576..111984099,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34541646	1.00[ASN][1000 genomes]
rs35633067	1.00[ASN][1000 genomes]
rs62163298	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv834331	chr2:111812139-112004678	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1803356	chr2:111899783-112662597	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv428402	chr2:111899783-112662597	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1801950	chr2:111899783-112746937	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv2757825	chr2:111899783-112746937	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	esv2759083	chr2:111899783-112746937	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
8	nsv874843	chr2:111966947-112023328	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv10124	chr2:111980182-111983797	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3505141	chr2:111980472-111983485	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3505142	chr2:111980472-111983485	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111954800-112006800	Weak transcription	HUVEC	blood vessel
2	chr2:111972400-111984400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:111974800-111984800	Weak transcription	NHDF-Ad	bronchial
4	chr2:111975000-111985600	Weak transcription	Esophagus	oesophagus
5	chr2:111975200-112008200	Weak transcription	Pancreas	Pancrea
6	chr2:111977400-111984600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:111977600-111984400	Weak transcription	HSMMtube	muscle
8	chr2:111977600-112011400	Weak transcription	A549	lung
9	chr2:111979800-111985200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:111979800-111986000	Weak transcription	Spleen	Spleen
11	chr2:111980400-111985400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:111980600-111993000	Weak transcription	Left Ventricle	heart
13	chr2:111980800-111984400	Weak transcription	Liver	Liver
14	chr2:111980800-111993000	Weak transcription	Right Ventricle	heart
15	chr2:111982800-111983600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:111982800-111983800	ZNF genes & repeats	HepG2	liver
17	chr2:111982800-111984200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:111982800-111984200	ZNF genes & repeats	Dnd41	blood
19	chr2:111983200-111984400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:111983200-111985200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:111983400-111983600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:111983400-111983600	Strong transcription	HSMM	muscle
23	chr2:111983400-111984000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:111983400-111984000	ZNF genes & repeats	K562	blood
25	chr2:111983400-111984200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:111983400-111985000	Enhancers	GM12878-XiMat	blood
27	chr2:111983400-111985400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:111983400-111985800	Enhancers	NHEK	skin
29	chr2:111983400-111989400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links