Variant report

Variant	rs556452588
Chromosome Location	chr11:86209255-86209256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86208558..86211731-chr11:86511256..86513544,4	MCF-7	breast:
2	chr11:86209247..86211333-chr11:86213787..86215304,2	K562	blood:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv274960	chr11:86207030-86209556	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3409146	chr11:86208841-86209438	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:86187600-86218600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:86188000-86210400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:86189200-86222600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:86189600-86221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:86195200-86222200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:86196200-86213600	Weak transcription	Brain Germinal Matrix	brain
9	chr11:86198000-86211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:86198200-86210600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:86198600-86222800	Weak transcription	Esophagus	oesophagus
12	chr11:86201400-86210000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:86202400-86210000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:86202800-86226400	Weak transcription	Fetal Lung	lung
15	chr11:86204000-86209400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:86204000-86222200	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:86204200-86210800	Weak transcription	Fetal Heart	heart
18	chr11:86204600-86220000	Weak transcription	Colonic Mucosa	Colon
19	chr11:86206600-86210200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:86206600-86210600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:86206800-86214200	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:86206800-86214600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:86206800-86214800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:86207000-86213400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:86207400-86209400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:86207800-86209400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:86207800-86209800	Strong transcription	Stomach Smooth Muscle	stomach
28	chr11:86208000-86209400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:86208000-86209600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:86208000-86209600	Enhancers	Placenta	Placenta
31	chr11:86208200-86209400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:86208200-86209400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr11:86208200-86209400	Enhancers	HSMM	muscle
34	chr11:86208200-86209400	Enhancers	HSMMtube	muscle
35	chr11:86208400-86209400	Strong transcription	Fetal Intestine Small	intestine
36	chr11:86208400-86209400	Genic enhancers	A549	lung
37	chr11:86208400-86209600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:86208600-86209400	Genic enhancers	Aorta	Aorta
39	chr11:86208600-86211600	Strong transcription	Brain Anterior Caudate	brain
40	chr11:86208800-86209400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:86208800-86209400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:86208800-86209400	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:86208800-86209800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr11:86208800-86210200	Weak transcription	Stomach Mucosa	stomach
45	chr11:86208800-86210200	Weak transcription	HepG2	liver
46	chr11:86209000-86210200	Weak transcription	Right Ventricle	heart
47	chr11:86209000-86214400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:86209000-86214400	Weak transcription	HUVEC	blood vessel
49	chr11:86209200-86209400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:86209200-86209400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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