Variant report

Variant	rs556454390
Chromosome Location	chr2:183315824-183315825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3323574	chr2:183315057-183317155	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv2479479	chr2:183315368-183316896	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3322767	chr2:183315607-183316605	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv2241730	chr2:183315617-183316309	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3458818	chr2:183315687-183316215	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3514656	chr2:183315706-183316224	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3514660	chr2:183315709-183316228	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3514657	chr2:183315728-183316164	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv7845	chr2:183315731-183316385	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3458817	chr2:183315743-183316191	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3458821	chr2:183315750-183316192	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3458820	chr2:183315756-183316146	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv2874	chr2:183315758-183316178	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3514658	chr2:183315761-183316184	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3419607	chr2:183315781-183316154	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3458816	chr2:183315791-183316129	Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv3514659	chr2:183315803-183316140	Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv215323	chr2:183315807-183316121	Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv3458822	chr2:183315807-183316138	Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv3514661	chr2:183315807-183316138	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183298800-183320800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:183313000-183321400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:183313000-183342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:183313800-183320800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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