Variant report

Variant	rs55646451
Chromosome Location	chr3:23846141-23846142
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
UBE2E1	TF binding region
ENSG00000197885	Chromatin interaction
ENSG00000182247	Chromatin interaction
ENSG00000233153	Chromatin interaction
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60078305	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73150213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23840000-23847000	Weak transcription	Right Atrium	heart
2	chr3:23840200-23846800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:23840200-23846800	Weak transcription	GM12878-XiMat	blood
4	chr3:23843800-23846200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:23843800-23846600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:23843800-23846800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:23844400-23846800	Enhancers	Fetal Intestine Small	intestine
8	chr3:23844400-23846800	Weak transcription	Small Intestine	intestine
9	chr3:23845400-23846600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:23845600-23846800	Weak transcription	Fetal Lung	lung
11	chr3:23845800-23846200	Enhancers	Duodenum Mucosa	Duodenum
12	chr3:23845800-23846600	Enhancers	A549	lung
13	chr3:23846000-23846200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:23846000-23846800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:23846000-23846800	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:23846000-23846800	Enhancers	Fetal Intestine Large	intestine
17	chr3:23846000-23846800	Enhancers	K562	blood
18	chr3:23846000-23847000	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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