Variant report

Variant	rs55646572
Chromosome Location	chr17:17687035-17687036
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr17:17685078-17690155	SK-N-SH	brain:	n/a	chr17:17688092-17688107
2	CTBP2	chr17:17686048-17688034	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr17:17685955-17687192	H1-hESC	embryonic stem cell:	n/a	chr17:17686730-17686740 chr17:17687056-17687066 chr17:17685993-17686003 chr17:17686470-17686480 chr17:17687000-17687009 chr17:17686269-17686279
4	FOXM1	chr17:17686761-17687336	GM12878	blood:	n/a	n/a
5	CTCF	chr17:17687000-17687150	GM12868	blood:	n/a	n/a
6	TAF1	chr17:17686477-17687301	H1-neurons	neurons:	n/a	n/a
7	ZNF263	chr17:17686666-17687158	HEK293-T-REx	kidney:	n/a	n/a
8	POLR2A	chr17:17686490-17687053	ECC-1	luminal epithelium:	n/a	n/a
9	TCF12	chr17:17686679-17687083	GM12878	blood:	n/a	n/a
10	EGR1	chr17:17686392-17687796	ECC-1	luminal epithelium:	n/a	chr17:17687097-17687106 chr17:17686721-17686734 chr17:17687012-17687022 chr17:17686722-17686733 chr17:17686659-17686669 chr17:17686657-17686670 chr17:17687097-17687107 chr17:17686721-17686735 chr17:17687093-17687103 chr17:17686724-17686733 chr17:17687092-17687102 chr17:17686721-17686734 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17686721-17686734 chr17:17686662-17686672 chr17:17686441-17686454 chr17:17686724-17686734 chr17:17687094-17687108 chr17:17686717-17686739 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17686720-17686735 chr17:17686658-17686669 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17686721-17686734 chr17:17686729-17686739 chr17:17687094-17687107 chr17:17687094-17687107 chr17:17686442-17686453
11	POLR2A	chr17:17686081-17687152	GM18951	blood:	n/a	n/a
12	BACH1	chr17:17686839-17687418	H1-hESC	embryonic stem cell:	n/a	n/a
13	EGR1	chr17:17686385-17687173	K562	blood:	n/a	chr17:17687097-17687106 chr17:17686721-17686734 chr17:17687012-17687022 chr17:17686722-17686733 chr17:17686659-17686669 chr17:17686657-17686670 chr17:17687097-17687107 chr17:17686721-17686735 chr17:17687093-17687103 chr17:17686724-17686733 chr17:17687092-17687102 chr17:17686721-17686734 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17686721-17686734 chr17:17686662-17686672 chr17:17686441-17686454 chr17:17686724-17686734 chr17:17687094-17687108 chr17:17686717-17686739 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17686720-17686735 chr17:17686658-17686669 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17686721-17686734 chr17:17686729-17686739 chr17:17687094-17687107 chr17:17687094-17687107 chr17:17686442-17686453
14	ELF1	chr17:17686085-17687216	GM12878	blood:	n/a	chr17:17686604-17686613 chr17:17686724-17686736 chr17:17686443-17686452 chr17:17686660-17686672 chr17:17686665-17686674 chr17:17686439-17686451 chr17:17687090-17687102 chr17:17686248-17686257
15	EP300	chr17:17686561-17687795	ECC-1	luminal epithelium:	n/a	chr17:17687090-17687106
16	CTCF	chr17:17686960-17687110	GM12874	blood:	n/a	n/a
17	TCF12	chr17:17686380-17687959	ECC-1	luminal epithelium:	n/a	n/a
18	EGR1	chr17:17686352-17687196	HCT-116	colon:	n/a	chr17:17687097-17687106 chr17:17686721-17686734 chr17:17687012-17687022 chr17:17686722-17686733 chr17:17686659-17686669 chr17:17686657-17686670 chr17:17687097-17687107 chr17:17686721-17686735 chr17:17687093-17687103 chr17:17686724-17686733 chr17:17687092-17687102 chr17:17686721-17686734 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17686721-17686734 chr17:17686662-17686672 chr17:17686441-17686454 chr17:17686724-17686734 chr17:17687094-17687108 chr17:17686717-17686739 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17686720-17686735 chr17:17686658-17686669 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17686721-17686734 chr17:17686729-17686739 chr17:17687094-17687107 chr17:17687094-17687107 chr17:17686442-17686453
19	MTA3	chr17:17686508-17687869	GM12878	blood:	n/a	n/a
20	TEAD4	chr17:17686418-17687939	ECC-1	luminal epithelium:	n/a	chr17:17687665-17687674
21	POLR2A	chr17:17685951-17687160	K562	blood:	n/a	n/a
22	ELF1	chr17:17686836-17687190	K562	blood:	n/a	chr17:17687090-17687102
23	ZBTB7A	chr17:17686412-17688378	ECC-1	luminal epithelium:	n/a	chr17:17686466-17686475
24	PAX5	chr17:17686798-17687112	GM12892	blood:	n/a	chr17:17686966-17686975
25	TCF12	chr17:17686344-17687906	ECC-1	luminal epithelium:	n/a	n/a
26	HA-E2F1	chr17:17686248-17687196	MCF-7	breast:	n/a	chr17:17687093-17687102 chr17:17687099-17687111 chr17:17686668-17686677 chr17:17686730-17686739 chr17:17686422-17686431 chr17:17687146-17687156 chr17:17686932-17686942 chr17:17686726-17686735
27	SIN3AK20	chr17:17686428-17687116	MCF-7	breast:	n/a	n/a
28	TCF7L2	chr17:17686196-17687738	HCT-116	colon:	n/a	n/a
29	ESR1	chr17:17686139-17687856	ECC-1	luminal epithelium:	n/a	chr17:17686621-17686638 chr17:17686621-17686636
30	EGR1	chr17:17686144-17687318	HCT-116	colon:	n/a	chr17:17687097-17687106 chr17:17686721-17686734 chr17:17687012-17687022 chr17:17686722-17686733 chr17:17686659-17686669 chr17:17686657-17686670 chr17:17687097-17687107 chr17:17686721-17686735 chr17:17687093-17687103 chr17:17686724-17686733 chr17:17687092-17687102 chr17:17686721-17686734 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17686721-17686734 chr17:17686662-17686672 chr17:17686441-17686454 chr17:17686724-17686734 chr17:17687094-17687108 chr17:17686717-17686739 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17686720-17686735 chr17:17686658-17686669 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17686721-17686734 chr17:17686729-17686739 chr17:17687094-17687107 chr17:17687094-17687107 chr17:17686442-17686453 chr17:17686226-17686236
31	TBP	chr17:17686718-17687048	H1-hESC	embryonic stem cell:	n/a	n/a
32	NFIC	chr17:17686440-17687941	ECC-1	luminal epithelium:	n/a	n/a
33	ZBTB7A	chr17:17684109-17688114	ECC-1	luminal epithelium:	n/a	chr17:17686466-17686475 chr17:17686238-17686245
34	REST	chr17:17684966-17688399	H1-neurons	neurons:	n/a	chr17:17687032-17687045 chr17:17688128-17688138 chr17:17687943-17687957 chr17:17686391-17686401 chr17:17687035-17687048 chr17:17686521-17686534 chr17:17685128-17685141 chr17:17686200-17686213
35	PAX5	chr17:17686647-17687100	GM12878	blood:	n/a	chr17:17686966-17686975
36	ESR1	chr17:17686309-17687763	ECC-1	luminal epithelium:	n/a	chr17:17686621-17686638 chr17:17686621-17686636
37	NANOG	chr17:17686770-17687106	H1-hESC	embryonic stem cell:	n/a	chr17:17686817-17686831
38	ZBTB7A	chr17:17686780-17687145	K562	blood:	n/a	n/a
39	MAZ	chr17:17686102-17687739	GM12878	blood:	n/a	chr17:17686730-17686740 chr17:17687056-17687066 chr17:17686470-17686480 chr17:17687000-17687009 chr17:17686269-17686279 chr17:17687501-17687511
40	EGR1	chr17:17686918-17687137	GM12878	blood:	n/a	chr17:17687097-17687106 chr17:17687012-17687022 chr17:17687097-17687107 chr17:17687093-17687103 chr17:17687092-17687102 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17687094-17687108 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17687094-17687107 chr17:17687094-17687107
41	POLR2A	chr17:17686692-17687079	MCF-7	breast:	n/a	n/a
42	ESR1	chr17:17686286-17687812	ECC-1	luminal epithelium:	n/a	chr17:17686621-17686638 chr17:17686621-17686636
43	NFIC	chr17:17686403-17687880	ECC-1	luminal epithelium:	n/a	n/a
44	REST	chr17:17686903-17687969	H1-neurons	neurons:	n/a	chr17:17687032-17687045 chr17:17687943-17687957 chr17:17687035-17687048
45	MAX	chr17:17686009-17688725	ECC-1	luminal epithelium:	n/a	chr17:17686730-17686740 chr17:17687056-17687066 chr17:17686470-17686480 chr17:17687000-17687009 chr17:17686269-17686279 chr17:17687501-17687511
46	EGR1	chr17:17686418-17687174	GM12878	blood:	n/a	chr17:17687097-17687106 chr17:17686721-17686734 chr17:17687012-17687022 chr17:17686722-17686733 chr17:17686659-17686669 chr17:17686657-17686670 chr17:17687097-17687107 chr17:17686721-17686735 chr17:17687093-17687103 chr17:17686724-17686733 chr17:17687092-17687102 chr17:17686721-17686734 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17686721-17686734 chr17:17686662-17686672 chr17:17686441-17686454 chr17:17686724-17686734 chr17:17687094-17687108 chr17:17686717-17686739 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17686720-17686735 chr17:17686658-17686669 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17686721-17686734 chr17:17686729-17686739 chr17:17687094-17687107 chr17:17687094-17687107 chr17:17686442-17686453
47	RELA	chr17:17686731-17687652	GM19099	blood:	n/a	n/a
48	EGR1	chr17:17686416-17687308	ECC-1	luminal epithelium:	n/a	chr17:17687097-17687106 chr17:17686721-17686734 chr17:17687012-17687022 chr17:17686722-17686733 chr17:17686659-17686669 chr17:17686657-17686670 chr17:17687097-17687107 chr17:17686721-17686735 chr17:17687093-17687103 chr17:17686724-17686733 chr17:17687092-17687102 chr17:17686721-17686734 chr17:17687094-17687107 chr17:17687093-17687108 chr17:17686721-17686734 chr17:17686662-17686672 chr17:17686441-17686454 chr17:17686724-17686734 chr17:17687094-17687108 chr17:17686717-17686739 chr17:17687013-17687022 chr17:17687094-17687107 chr17:17686720-17686735 chr17:17686658-17686669 chr17:17687012-17687025 chr17:17687081-17687094 chr17:17686721-17686734 chr17:17686729-17686739 chr17:17687094-17687107 chr17:17687094-17687107 chr17:17686442-17686453
49	MAX	chr17:17686420-17688111	ECC-1	luminal epithelium:	n/a	chr17:17686730-17686740 chr17:17687056-17687066 chr17:17686470-17686480 chr17:17687000-17687009 chr17:17687501-17687511
50	ZEB1	chr17:17686444-17687093	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:17583171..17587600-chr17:17683205..17687633,5	MCF-7	breast:
2	chr17:17683965..17687759-chr17:17739269..17741858,4	K562	blood:
3	chr17:17685908..17688638-chr17:17739625..17744756,9	MCF-7	breast:
4	chr17:17623385..17625295-chr17:17685917..17688281,2	MCF-7	breast:
5	chr17:17581707..17587972-chr17:17684185..17691006,14	MCF-7	breast:
6	chr17:17680425..17682951-chr17:17684524..17687112,3	K562	blood:
7	chr17:17583782..17586496-chr17:17685897..17688578,2	K562	blood:
8	chr17:17686873..17689808-chr17:17705092..17707202,2	MCF-7	breast:
9	chr17:17596273..17597839-chr17:17685487..17687747,2	MCF-7	breast:
10	chr10:121484591..121485327-chr17:17686116..17687101,2	NB4	blood:
11	chr17:17685362..17690405-chr17:17711256..17718354,8	MCF-7	breast:
12	chr17:17658357..17659243-chr17:17686198..17687096,5	MCF-7	breast:
13	chr17:17679491..17683222-chr17:17686874..17689759,4	MCF-7	breast:
14	chr17:17686748..17688338-chr17:17699379..17701394,2	MCF-7	breast:
15	chr17:17673495..17677565-chr17:17684022..17690653,6	MCF-7	breast:
16	chr17:17654471..17656540-chr17:17686884..17689253,2	K562	blood:
17	chr17:17681173..17684236-chr17:17685903..17687654,3	MCF-7	breast:
18	chr17:17686081..17687652-chrX:48392038..48393539,2	K562	blood:
19	chr17:17685589..17688430-chr17:17722427..17724500,2	MCF-7	breast:
20	chr17:17658357..17659324-chr17:17686198..17687096,5	MCF-7	breast:
21	chr17:17686202..17687048-chr17:17718326..17718902,2	MCF-7	breast:
22	chr17:17685392..17687636-chr17:17695212..17698181,2	MCF-7	breast:
23	chr17:17685134..17688509-chr17:17722863..17726624,4	MCF-7	breast:
24	chr17:17685438..17688763-chr17:17737889..17741903,5	K562	blood:
25	chr17:17664602..17666200-chr17:17686548..17688309,2	MCF-7	breast:

Variant related genes	Relation type
SMCR5	TF binding region
ENSG00000237328	Chromatin interaction
ENSG00000264167	Chromatin interaction
ENSG00000226746	Chromatin interaction
ENSG00000108557	Chromatin interaction
ENSG00000072310	Chromatin interaction
ENSG00000207839	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1006656	0.87[AFR][1000 genomes]
rs11078397	0.83[EUR][1000 genomes]
rs11651378	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11651383	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11652525	0.83[EUR][1000 genomes]
rs11652656	0.84[EUR][1000 genomes]
rs11653424	0.83[EUR][1000 genomes]
rs11653696	0.83[EUR][1000 genomes]
rs11658846	0.83[EUR][1000 genomes]
rs35686634	0.81[EUR][1000 genomes]
rs4925112	0.81[EUR][1000 genomes]
rs56022233	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60149982	0.83[EUR][1000 genomes]
rs60549849	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60889477	0.81[EUR][1000 genomes]
rs73295691	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73295699	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8066159	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8066177	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9910075	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
6	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
7	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
8	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
12	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv543241	chr17:17596222-17703059	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
17	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
18	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
19	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
20	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
21	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
22	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
23	nsv532109	chr17:17630064-17700497	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
25	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	nsv907760	chr17:17649423-17782404	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
27	nsv907761	chr17:17649423-17802478	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
28	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
29	nsv907762	chr17:17668071-17802478	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
30	esv1804029	chr17:17669662-17714250	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv907763	chr17:17673824-17749822	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
32	nsv907764	chr17:17673824-17754633	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
33	nsv907765	chr17:17682484-17802478	Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
34	nsv907766	chr17:17682484-17957348	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
35	esv3439095	chr17:17685252-17688100	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17678200-17687600	Weak transcription	Hela-S3	cervix
2	chr17:17682200-17687200	Weak transcription	HSMMtube	muscle
3	chr17:17684200-17687600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr17:17684200-17688000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr17:17684200-17688000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr17:17684200-17688200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:17684400-17687200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:17684400-17687200	Flanking Active TSS	HMEC	breast
9	chr17:17684400-17688200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr17:17684600-17687800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr17:17684800-17687400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr17:17684800-17687400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr17:17684800-17687600	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr17:17684800-17687600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr17:17684800-17687800	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr17:17684800-17688400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr17:17685000-17687200	Active TSS	Primary T cells from cord blood	blood
18	chr17:17685000-17687400	Flanking Active TSS	HUVEC	blood vessel
19	chr17:17685000-17687600	Active TSS	Aorta	Aorta
20	chr17:17685000-17687600	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr17:17685000-17687600	Active TSS	Ovary	ovary
22	chr17:17685000-17687800	Flanking Active TSS	Colonic Mucosa	Colon
23	chr17:17685000-17688000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr17:17685200-17687200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:17685200-17687200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:17685200-17687200	Active TSS	Brain Angular Gyrus	brain
27	chr17:17685200-17687200	Active TSS	Brain Cingulate Gyrus	brain
28	chr17:17685200-17687200	Active TSS	Colon Smooth Muscle	Colon
29	chr17:17685200-17687400	Active TSS	Brain Anterior Caudate	brain
30	chr17:17685200-17687400	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr17:17685200-17687400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr17:17685200-17687400	Active TSS	Brain Substantia Nigra	brain
33	chr17:17685200-17687400	Active TSS	Fetal Brain Female	brain
34	chr17:17685200-17687400	Active TSS	Rectal Smooth Muscle	rectum
35	chr17:17685200-17687400	Active TSS	Right Ventricle	heart
36	chr17:17685200-17687600	Flanking Active TSS	NH-A	brain
37	chr17:17685400-17687200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr17:17685400-17687200	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr17:17685400-17687200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr17:17685400-17687200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:17685400-17687200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr17:17685400-17687200	Active TSS	HSMM	muscle
43	chr17:17685400-17687400	Active TSS	H1 Cell Line	embryonic stem cell
44	chr17:17685400-17687400	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr17:17685400-17687800	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr17:17685400-17688000	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr17:17685600-17687200	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr17:17685600-17687200	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr17:17685600-17687200	Active TSS	Fetal Lung	lung
50	chr17:17685600-17687400	Active TSS	Brain Germinal Matrix	brain

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