Variant report

Variant	rs556480943
Chromosome Location	chr4:26691139-26691140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
4	chr4:26663600-26691800	Weak transcription	Right Ventricle	heart
5	chr4:26663800-26691200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:26663800-26691400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:26666800-26691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
10	chr4:26678600-26691400	Weak transcription	Adipose Nuclei	Adipose
11	chr4:26681400-26691400	Weak transcription	Ovary	ovary
12	chr4:26681400-26691800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:26681400-26693000	Weak transcription	Fetal Stomach	stomach
14	chr4:26681400-26694800	Weak transcription	Fetal Intestine Large	intestine
15	chr4:26681400-26695200	Weak transcription	Lung	lung
16	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
18	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:26681600-26691200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:26681600-26691400	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:26681600-26692200	Weak transcription	Liver	Liver
22	chr4:26681600-26693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:26681800-26691200	Weak transcription	Brain Angular Gyrus	brain
25	chr4:26681800-26691400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:26681800-26693800	Weak transcription	Fetal Intestine Small	intestine
27	chr4:26681800-26694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:26681800-26694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:26681800-26695800	Weak transcription	Brain Germinal Matrix	brain
30	chr4:26681800-26696000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:26681800-26696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:26682000-26693800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr4:26682200-26691800	Weak transcription	Fetal Brain Female	brain
36	chr4:26682400-26691600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:26682600-26691200	Weak transcription	Dnd41	blood
38	chr4:26683200-26695600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:26683800-26691400	Weak transcription	Brain Substantia Nigra	brain
40	chr4:26684000-26693400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:26684000-26694400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:26684000-26695000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr4:26684400-26691600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:26684400-26692800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:26684400-26693800	Weak transcription	Pancreas	Pancrea
46	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
47	chr4:26684800-26691800	Weak transcription	Brain Anterior Caudate	brain
48	chr4:26686200-26691400	Weak transcription	Thymus	Thymus
49	chr4:26686200-26692600	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:26686200-26694000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links