Variant report

Variant	rs556502391
Chromosome Location	chr11:127502229-127502230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036740	chr11:126625228-127528450	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1043894	chr11:127423435-127637119	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv541202	chr11:127423435-127637119	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1035919	chr11:127500933-127561596	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541203	chr11:127500933-127561596	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127496000-127509600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:127498200-127502800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:127498600-127502400	Weak transcription	Fetal Stomach	stomach
4	chr11:127498600-127502600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:127501000-127502400	Enhancers	Brain Germinal Matrix	brain
6	chr11:127501000-127503000	Enhancers	Fetal Kidney	kidney
7	chr11:127501200-127504400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:127501600-127502600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:127501600-127502800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:127501600-127502800	Enhancers	Fetal Heart	heart
11	chr11:127501600-127503800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:127501600-127504400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:127501800-127503200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:127501800-127503200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:127501800-127503400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:127501800-127504400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:127501800-127504400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:127502200-127503200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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