Variant report

Variant	rs556522160
Chromosome Location	chr15:78110845-78110846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78093726..78095482-chr15:78109302..78111368,2	K562	blood:
2	chr15:78109668..78112280-chr15:78112604..78115106,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv904421	chr15:78041789-78129964	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv904423	chr15:78059488-78119345	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904424	chr15:78059488-78158893	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv471255	chr15:78063585-78131097	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv570171	chr15:78064664-78131097	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv904425	chr15:78064664-78153850	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	nsv570172	chr15:78088127-78111702	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	esv1806493	chr15:78106177-78119345	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv3321779	chr15:78109497-78113895	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	esv3422045	chr15:78110122-78112870	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv3375400	chr15:78110347-78113670	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78107400-78111600	Weak transcription	Gastric	stomach
2	chr15:78109800-78111800	Bivalent Enhancer	Spleen	Spleen
3	chr15:78110200-78111000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:78110400-78111000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
5	chr15:78110400-78111200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:78110400-78111200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
7	chr15:78110600-78111000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr15:78110600-78111000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr15:78110600-78111000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:78110600-78111000	Bivalent/Poised TSS	Fetal Brain Female	brain
11	chr15:78110600-78111000	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr15:78110600-78111600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:78110600-78111600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
14	chr15:78110600-78111600	Bivalent Enhancer	Esophagus	oesophagus
15	chr15:78110600-78111600	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr15:78110600-78111800	Bivalent Enhancer	Placenta	Placenta
17	chr15:78110600-78112800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr15:78110600-78112800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
19	chr15:78110600-78113000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr15:78110600-78113000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr15:78110600-78113200	Active TSS	Brain Angular Gyrus	brain
22	chr15:78110800-78111000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
23	chr15:78110800-78111000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:78110800-78111000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
25	chr15:78110800-78111000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
26	chr15:78110800-78111000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr15:78110800-78111000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:78110800-78111000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:78110800-78111000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
30	chr15:78110800-78111000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
31	chr15:78110800-78111200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
32	chr15:78110800-78111200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:78110800-78111200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
34	chr15:78110800-78111200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:78110800-78111200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:78110800-78111400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
37	chr15:78110800-78111400	Bivalent Enhancer	Fetal Brain Male	brain
38	chr15:78110800-78111600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:78110800-78111600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:78110800-78111600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:78110800-78111600	Bivalent Enhancer	Colonic Mucosa	Colon
42	chr15:78110800-78111600	Bivalent/Poised TSS	Right Ventricle	heart
43	chr15:78110800-78111600	Bivalent Enhancer	HMEC	breast
44	chr15:78110800-78112800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr15:78110800-78112800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:78110800-78113000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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