Variant report

Variant	rs556536268
Chromosome Location	chr7:139708902-139708903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139708154..139710835-chr7:139713818..139716854,4	K562	blood:
2	chr7:139707115..139709190-chr7:139721974..139723889,2	MCF-7	breast:
3	chr7:139704249..139705856-chr7:139707585..139709805,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv608476	chr7:139696248-139717200	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv608477	chr7:139697043-139718147	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3355856	chr7:139708308-139710856	Weak transcription Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139681000-139717800	Weak transcription	Thymus	Thymus
2	chr7:139693200-139729000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:139695200-139721600	Weak transcription	Colonic Mucosa	Colon
4	chr7:139695800-139709000	Weak transcription	Gastric	stomach
5	chr7:139702200-139712000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:139702200-139721800	Weak transcription	Fetal Thymus	thymus
7	chr7:139702400-139722400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:139702600-139742200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:139703200-139727800	Weak transcription	Right Atrium	heart
10	chr7:139704200-139710200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:139704200-139728800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:139705400-139722000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:139706000-139710400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:139706000-139727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:139706200-139710200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:139706400-139709800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr7:139706400-139710600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:139706400-139718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:139706800-139709000	Enhancers	Fetal Heart	heart
20	chr7:139707200-139711400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:139707600-139713200	Weak transcription	Lung	lung
22	chr7:139707800-139722200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:139708400-139711800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:139708600-139709000	Enhancers	Brain Angular Gyrus	brain
25	chr7:139708600-139709000	Enhancers	Brain Cingulate Gyrus	brain
26	chr7:139708600-139709000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr7:139708600-139709000	Enhancers	Brain Substantia Nigra	brain
28	chr7:139708600-139709200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:139708600-139709200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr7:139708600-139709200	Enhancers	Fetal Muscle Leg	muscle
31	chr7:139708600-139709200	Strong transcription	Spleen	Spleen
32	chr7:139708600-139709400	Enhancers	Liver	Liver
33	chr7:139708600-139710600	Enhancers	Pancreas	Pancrea
34	chr7:139708600-139710600	Enhancers	Stomach Mucosa	stomach
35	chr7:139708800-139709000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr7:139708800-139709000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr7:139708800-139709400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:139708800-139717000	Weak transcription	Esophagus	oesophagus

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