Variant report

Variant	rs55653883
Chromosome Location	chr4:130994623-130994624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10007976	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10009505	0.82[EUR][1000 genomes]
rs10009692	0.80[EUR][1000 genomes]
rs10020513	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099031	0.85[EUR][1000 genomes]
rs11936021	0.84[EUR][1000 genomes]
rs13137863	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13147905	0.86[AFR][1000 genomes]
rs1507778	0.84[EUR][1000 genomes]
rs1532248	0.86[AFR][1000 genomes]
rs1532962	0.84[EUR][1000 genomes]
rs17050835	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28802600	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28864752	0.95[EUR][1000 genomes]
rs28885735	0.82[EUR][1000 genomes]
rs4864305	0.83[EUR][1000 genomes]
rs4864307	0.84[EUR][1000 genomes]
rs4864317	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828733	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836165	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656769	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7663163	0.84[EUR][1000 genomes]
rs7664923	0.81[EUR][1000 genomes]
rs7665107	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665493	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666213	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7690506	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595412	chr4:130962263-131001046	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv461640	chr4:130962263-131003605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595413	chr4:130962263-131003605	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1027281	chr4:130962945-131005768	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1027051	chr4:130962945-131010834	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1019114	chr4:130962945-131013140	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1027197	chr4:130965914-130998219	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1028045	chr4:130965914-131004697	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv595414	chr4:130983055-131024471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130989600-130995400	Weak transcription	Stomach Mucosa	stomach
2	chr4:130990000-130995200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:130990000-130996800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:130992200-130995800	Enhancers	Fetal Intestine Large	intestine
5	chr4:130992800-130996000	Enhancers	Duodenum Mucosa	Duodenum
6	chr4:130993800-130995400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:130994000-130995200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:130994000-130995200	Weak transcription	Fetal Intestine Small	intestine
9	chr4:130994200-130994800	Enhancers	HepG2	liver
10	chr4:130994400-130995400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:130994600-130995000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr4:130994600-130995600	Flanking Active TSS	Liver	Liver

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