Variant report

Variant	rs55654107
Chromosome Location	chr10:46095847-46095848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10900228	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11239580	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11239583	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11492889	1.00[AFR][1000 genomes]
rs34257967	0.87[AMR][1000 genomes]
rs41304611	1.00[AFR][1000 genomes]
rs55893855	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55895325	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61854124	1.00[AFR][1000 genomes]
rs61854126	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1050880	chr10:46091441-46160597	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv540588	chr10:46091441-46160597	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:46090800-46096000	Weak transcription	Right Ventricle	heart
3	chr10:46094000-46096000	Enhancers	Fetal Intestine Small	intestine
4	chr10:46094000-46096200	Enhancers	Liver	Liver
5	chr10:46094400-46096000	ZNF genes & repeats	K562	blood
6	chr10:46094600-46096000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:46095400-46096200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr10:46095400-46097200	Weak transcription	HepG2	liver
9	chr10:46095600-46096000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr10:46095600-46096000	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:46095600-46096000	Enhancers	Left Ventricle	heart
12	chr10:46095600-46096000	Enhancers	Pancreas	Pancrea
13	chr10:46095800-46096000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:46095800-46096000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:46095800-46096000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:46095800-46096000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr10:46095800-46096000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:46095800-46096000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr10:46095800-46096000	Bivalent Enhancer	Fetal Intestine Large	intestine
20	chr10:46095800-46096000	Bivalent/Poised TSS	Fetal Kidney	kidney
21	chr10:46095800-46096000	Bivalent Enhancer	Fetal Lung	lung
22	chr10:46095800-46096000	Bivalent Enhancer	Fetal Stomach	stomach
23	chr10:46095800-46096000	Weak transcription	Gastric	stomach
24	chr10:46095800-46096000	Bivalent/Poised TSS	HMEC	breast
25	chr10:46095800-46096000	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
26	chr10:46095800-46096200	Enhancers	Primary B cells from peripheral blood	blood
27	chr10:46095800-46096200	Bivalent Enhancer	Brain Hippocampus Middle	brain
28	chr10:46095800-46096200	Bivalent/Poised TSS	NHEK	skin
29	chr10:46095800-46096400	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr10:46095800-46096600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:46095800-46096600	Active TSS	Pancreatic Islets	Pancreatic Islet

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