The 2.0 version of rSNPBase

Variant report

Variant rs55654136
Chromosome Location chr6:143793524-143793525
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143772600-143811600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr6:143772600-143832000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr6:143772800-143796600 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr6:143772800-143798600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr6:143772800-143815000 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr6:143772800-143821200 Weak transcription Psoas Muscle Psoas
7 chr6:143773000-143793600 Weak transcription HSMMtube muscle
8 chr6:143773000-143797400 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr6:143773000-143801400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr6:143773000-143811600 Weak transcription Right Ventricle heart
11 chr6:143773000-143814600 Weak transcription Rectal Smooth Muscle rectum
12 chr6:143773000-143814800 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr6:143773000-143815000 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr6:143773000-143815000 Weak transcription Colonic Mucosa Colon
15 chr6:143773200-143793600 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr6:143773200-143827000 Weak transcription Brain Germinal Matrix brain
17 chr6:143773400-143796800 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr6:143773400-143814200 Weak transcription K562 blood
19 chr6:143773400-143814600 Weak transcription HUVEC blood vessel
20 chr6:143773400-143814800 Weak transcription Hela-S3 cervix
21 chr6:143773400-143815000 Weak transcription A549 lung
22 chr6:143773400-143818200 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr6:143773400-143832000 Weak transcription Fetal Brain Male brain
24 chr6:143774400-143819400 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr6:143775000-143796200 Weak transcription Fetal Brain Female brain
26 chr6:143776200-143796400 Weak transcription Brain Hippocampus Middle brain
27 chr6:143777800-143796800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
28 chr6:143778800-143794200 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr6:143779000-143794000 Weak transcription GM12878-XiMat blood
30 chr6:143779000-143818200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr6:143779200-143816800 Weak transcription Placenta Amnion Placenta Amnion
32 chr6:143779400-143794200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr6:143779400-143796000 Weak transcription Fetal Kidney kidney
34 chr6:143779400-143804600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr6:143779600-143793600 Weak transcription NH-A brain
36 chr6:143779600-143793600 Weak transcription Osteobl bone
37 chr6:143780200-143796200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr6:143781000-143832000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr6:143781200-143798000 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr6:143781200-143800200 Weak transcription Muscle Satellite Cultured Cells --
41 chr6:143782200-143793600 Weak transcription Colon Smooth Muscle Colon
42 chr6:143782600-143793800 Weak transcription Primary hematopoietic stem cells blood
43 chr6:143782600-143793800 Weak transcription Fetal Muscle Leg muscle
44 chr6:143782600-143794200 Weak transcription Brain Cingulate Gyrus brain
45 chr6:143782600-143796600 Weak transcription HMEC breast
46 chr6:143783000-143793600 Weak transcription Brain Inferior Temporal Lobe brain
47 chr6:143783000-143794200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr6:143783000-143814600 Weak transcription Fetal Intestine Small intestine
49 chr6:143783200-143818400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr6:143783400-143795800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015