Variant report

Variant	rs556544124
Chromosome Location	chr10:38302542-38302543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38298051..38301249-chr10:38301272..38302914,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189180	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv947853	chr10:38301938-38306401	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38300400-38304200	Weak transcription	Esophagus	oesophagus
2	chr10:38300400-38305200	Weak transcription	Lung	lung
3	chr10:38300400-38305800	Weak transcription	Ovary	ovary
4	chr10:38300400-38305800	Weak transcription	Spleen	Spleen
5	chr10:38300400-38306000	Weak transcription	Small Intestine	intestine
6	chr10:38300400-38319600	Weak transcription	Gastric	stomach
7	chr10:38300600-38303600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:38300600-38304000	Weak transcription	Aorta	Aorta
9	chr10:38300600-38305200	Weak transcription	Left Ventricle	heart
10	chr10:38300600-38306000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:38300600-38306000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:38300600-38318000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:38300600-38331600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:38300600-38336000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:38300600-38339400	Weak transcription	Psoas Muscle	Psoas
16	chr10:38300800-38302600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:38300800-38302800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:38300800-38302800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:38300800-38303000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:38300800-38303200	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr10:38300800-38303400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:38300800-38303600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:38300800-38304200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:38300800-38304600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr10:38300800-38305600	Weak transcription	NHDF-Ad	bronchial
26	chr10:38300800-38306200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:38300800-38306600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:38300800-38307000	Weak transcription	Colonic Mucosa	Colon
29	chr10:38300800-38307200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:38300800-38307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:38300800-38308600	Weak transcription	HSMM	muscle
32	chr10:38300800-38322000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:38300800-38339200	Weak transcription	HSMMtube	muscle
34	chr10:38301000-38302600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:38301000-38302600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr10:38301000-38302800	Weak transcription	Adipose Nuclei	Adipose
37	chr10:38301000-38302800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:38301000-38303200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:38301000-38303400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:38301000-38304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:38301000-38304800	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:38301000-38305000	Weak transcription	Brain Angular Gyrus	brain
43	chr10:38301000-38305200	Weak transcription	Osteobl	bone
44	chr10:38301000-38305800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:38301000-38306000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:38301200-38302800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:38301200-38302800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:38301200-38302800	Weak transcription	Fetal Intestine Large	intestine
49	chr10:38301200-38302800	Weak transcription	Fetal Lung	lung
50	chr10:38301200-38302800	Weak transcription	A549	lung

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