Variant report

Variant	rs55655136
Chromosome Location	chr15:75285114-75285115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1108059	0.86[AMR][1000 genomes]
rs12148425	0.81[AMR][1000 genomes]
rs2289583	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2304901	0.86[AMR][1000 genomes]
rs55922358	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56936958	0.83[AMR][1000 genomes]
rs72730583	0.86[AMR][1000 genomes]
rs72730585	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72730586	0.83[AMR][1000 genomes]
rs72730587	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75283200-75287400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:75283400-75287400	Weak transcription	HMEC	breast
3	chr15:75283400-75287400	Weak transcription	NHEK	skin
4	chr15:75283400-75287600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:75284400-75286200	Enhancers	Brain Hippocampus Middle	brain
6	chr15:75284600-75286000	Weak transcription	Brain Angular Gyrus	brain
7	chr15:75284600-75286000	Weak transcription	Brain Substantia Nigra	brain
8	chr15:75284600-75286000	Weak transcription	Fetal Brain Female	brain
9	chr15:75284800-75286600	Enhancers	Brain Germinal Matrix	brain
10	chr15:75285000-75285200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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