Variant report

Variant	rs55655554
Chromosome Location	chr11:76887611-76887612
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76762488..76764509-chr11:76886200..76888160,2	MCF-7	breast:
2	chr11:76878152..76880429-chr11:76885737..76888669,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10466708	0.90[EUR][1000 genomes]
rs11237112	0.90[EUR][1000 genomes]
rs12286111	0.90[EUR][1000 genomes]
rs55843987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73495787	0.90[EUR][1000 genomes]
rs73497617	1.00[EUR][1000 genomes]
rs73497622	1.00[EUR][1000 genomes]
rs867506	0.90[EUR][1000 genomes]
rs867716	1.00[EUR][1000 genomes]
rs883742	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
2	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
3	chr11:76881200-76888000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:76882400-76888000	Enhancers	Fetal Muscle Leg	muscle
5	chr11:76883200-76889200	Weak transcription	Gastric	stomach
6	chr11:76883400-76887800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:76883400-76889800	Weak transcription	Ovary	ovary
8	chr11:76883800-76898400	Weak transcription	Colonic Mucosa	Colon
9	chr11:76884000-76888200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:76885200-76896000	Strong transcription	Fetal Intestine Large	intestine
11	chr11:76885400-76887800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:76885400-76887800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:76885400-76887800	Enhancers	HSMMtube	muscle
14	chr11:76885400-76896000	Strong transcription	Fetal Intestine Small	intestine
15	chr11:76885600-76887800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:76885600-76890000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:76885800-76889800	Weak transcription	HepG2	liver
18	chr11:76886000-76887800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr11:76886000-76888000	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:76886000-76894600	Weak transcription	Brain Substantia Nigra	brain
21	chr11:76886200-76887800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr11:76886200-76887800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:76886200-76887800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr11:76886200-76888400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:76886400-76887800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr11:76886400-76888200	Weak transcription	Liver	Liver
27	chr11:76886800-76888000	Enhancers	Lung	lung
28	chr11:76886800-76888600	Enhancers	Fetal Muscle Trunk	muscle
29	chr11:76887000-76888000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:76887000-76888600	Enhancers	Adipose Nuclei	Adipose
31	chr11:76887000-76888600	Enhancers	Placenta	Placenta
32	chr11:76887000-76895000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:76887200-76888000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr11:76887400-76888400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:76887400-76890000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:76887400-76890000	Weak transcription	Right Ventricle	heart
37	chr11:76887400-76891600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:76887600-76887800	Enhancers	Brain Anterior Caudate	brain
39	chr11:76887600-76887800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr11:76887600-76888200	Weak transcription	Spleen	Spleen
41	chr11:76887600-76891600	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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