Variant report

Variant	rs556557024
Chromosome Location	chr2:173290868-173290869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173290254..173291940-chr2:173293674..173296240,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv875414	chr2:173267081-173307756	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1847874	chr2:173277361-173308318	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv583663	chr2:173287832-173307756	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv583664	chr2:173289239-173307756	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173285200-173291800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:173285200-173291800	Enhancers	Fetal Thymus	thymus
3	chr2:173287800-173291000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:173288400-173291000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:173288400-173291800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:173289000-173291600	Weak transcription	Adipose Nuclei	Adipose
7	chr2:173289400-173291400	Weak transcription	NHEK	skin
8	chr2:173290200-173291400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:173290200-173291400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr2:173290200-173291600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:173290200-173291600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:173290200-173291600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr2:173290200-173291800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:173290200-173291800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:173290200-173292000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
16	chr2:173290400-173291000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:173290400-173291400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
18	chr2:173290400-173291400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr2:173290400-173291400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:173290400-173291800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr2:173290600-173291000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr2:173290600-173291200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr2:173290600-173291400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr2:173290600-173291600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr2:173290600-173291600	Enhancers	Primary T cells from cord blood	blood
26	chr2:173290600-173291800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:173290600-173291800	Weak transcription	Psoas Muscle	Psoas
28	chr2:173290800-173291000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
29	chr2:173290800-173291600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr2:173290800-173291600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr2:173290800-173291600	Enhancers	Thymus	Thymus
32	chr2:173290800-173291800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr2:173290800-173291800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr2:173290800-173291800	Bivalent Enhancer	Fetal Muscle Leg	muscle

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