Variant report

Variant	rs556558976
Chromosome Location	chr5:167672313-167672314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv5117	chr5:167666701-167711857	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv462512	chr5:167672105-167702041	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv600257	chr5:167672105-167702041	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167646200-167674000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167646800-167674000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:167646800-167695800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:167647200-167673600	Weak transcription	Fetal Lung	lung
5	chr5:167656400-167674000	Weak transcription	HSMM	muscle
6	chr5:167658200-167673600	Weak transcription	Fetal Brain Male	brain
7	chr5:167661600-167688200	Weak transcription	HMEC	breast
8	chr5:167662200-167673800	Weak transcription	Brain Germinal Matrix	brain
9	chr5:167663600-167673400	Weak transcription	NHEK	skin
10	chr5:167666000-167674000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:167666400-167682600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:167667200-167673800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:167667200-167679200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:167667600-167673800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:167668000-167673800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:167668600-167679600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167668800-167674000	Weak transcription	Fetal Brain Female	brain
18	chr5:167669600-167673800	Weak transcription	Right Ventricle	heart
19	chr5:167670000-167673000	Enhancers	GM12878-XiMat	blood
20	chr5:167671200-167673800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:167671400-167674000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:167671600-167672400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:167671600-167673000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:167671800-167672800	Enhancers	Osteobl	bone
25	chr5:167672000-167672800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:167672000-167673000	Enhancers	Brain Anterior Caudate	brain
27	chr5:167672000-167673800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:167672000-167673800	Weak transcription	Left Ventricle	heart
29	chr5:167672200-167672800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:167672200-167673800	Weak transcription	Brain Angular Gyrus	brain
31	chr5:167672200-167695800	Weak transcription	Fetal Heart	heart

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