Variant report

Variant	rs556563003
Chromosome Location	chr12:42159131-42159132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

No data

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDZRN4-1	chr12:42159122-42159368	XLOC_009714
2	lnc-PDZRN4-1	chr12:42159122-42159368	XLOC_009714
3	lnc-PDZRN4-1	chr12:42159122-42159375	XLOC_009714
4	lnc-PDZRN4-1	chr12:42159122-42159375	XLOC_009714
5	lnc-PDZRN4-1	chr12:42159122-42159368	XLOC_009714
6	lnc-PDZRN4-1	chr12:42159122-42159375	XLOC_009714
7	lnc-PDZRN4-1	chr12:42159122-42159368	XLOC_009714
8	lnc-PDZRN4-1	chr12:42159122-42159360	ENSG00000257784.1
9	lnc-PDZRN4-1	chr12:42159122-42159383	ENSG00000257784.1
10	lnc-PDZRN4-1	chr12:42159121-42159375	NONHSAT027752
11	lnc-PDZRN4-1	chr12:42159122-42159378	NONHSAT027756

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899045	chr12:42118062-42174431	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv975412	chr12:42158676-42161689	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42158600-42165600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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