The 2.0 version of rSNPBase

Variant report

Variant rs556565949
Chromosome Location chr4:54452615-54452616
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54425200-54457400 Weak transcription Right Atrium heart
2 chr4:54431200-54456600 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr4:54438600-54452800 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr4:54439000-54454800 Weak transcription Left Ventricle heart
5 chr4:54439200-54454600 Weak transcription Aorta Aorta
6 chr4:54443600-54457000 Weak transcription Colonic Mucosa Colon
7 chr4:54443800-54453600 Weak transcription Duodenum Mucosa Duodenum
8 chr4:54444000-54454600 Weak transcription Placenta Placenta
9 chr4:54447400-54454800 Weak transcription Gastric stomach
10 chr4:54448600-54454600 Weak transcription Esophagus oesophagus
11 chr4:54448600-54457400 Weak transcription HMEC breast
12 chr4:54448800-54453200 Weak transcription Liver Liver
13 chr4:54448800-54453600 Weak transcription Fetal Kidney kidney
14 chr4:54449200-54453800 Weak transcription Pancreas Pancrea
15 chr4:54449800-54453800 Enhancers NHDF-Ad bronchial
16 chr4:54450000-54454600 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr4:54450800-54457000 Weak transcription Placenta Amnion Placenta Amnion
18 chr4:54451000-54453400 Enhancers NHLF lung
19 chr4:54451400-54453600 Enhancers Fetal Heart heart
20 chr4:54451600-54452800 Enhancers Muscle Satellite Cultured Cells --
21 chr4:54451600-54452800 Enhancers NHEK skin
22 chr4:54451600-54453000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
23 chr4:54451600-54453000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
24 chr4:54451800-54452800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr4:54451800-54452800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
26 chr4:54451800-54452800 Enhancers Sigmoid Colon Sigmoid Colon
27 chr4:54451800-54453000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr4:54451800-54453000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
29 chr4:54451800-54453000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr4:54451800-54453000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr4:54451800-54453200 Enhancers Rectal Mucosa Donor 31 rectum
32 chr4:54451800-54453200 Enhancers Osteobl bone
33 chr4:54452000-54452800 Enhancers HSMMtube muscle
34 chr4:54452000-54453000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr4:54452000-54453000 Enhancers NH-A brain
36 chr4:54452200-54452800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
37 chr4:54452400-54452800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr4:54452400-54455600 Enhancers Fetal Intestine Small intestine
39 chr4:54452600-54453000 Enhancers Small Intestine intestine
40 chr4:54452600-54453200 Enhancers Rectal Mucosa Donor 29 rectum
41 chr4:54452600-54454600 Weak transcription Fetal Muscle Leg muscle
42 chr4:54452600-54456200 Enhancers Fetal Intestine Large intestine
43 chr4:54452600-54456400 Weak transcription Fetal Lung lung
44 chr4:54452600-54458600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr4:54452600-54459600 Enhancers HepG2 liver

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Last update: Aug 31, 2015