Variant report

Variant	rs556566175
Chromosome Location	chr4:107123758-107123759
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv968008	chr4:107122737-107129029	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:107075800-107129600	Weak transcription	Spleen	Spleen
4	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:107083800-107134000	Weak transcription	Right Ventricle	heart
6	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:107084000-107129800	Weak transcription	Lung	lung
8	chr4:107084200-107129600	Weak transcription	Aorta	Aorta
9	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:107085000-107129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:107085000-107150000	Weak transcription	Dnd41	blood
12	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
13	chr4:107087200-107129800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:107088400-107166400	Weak transcription	K562	blood
15	chr4:107091200-107129200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:107091400-107129800	Weak transcription	Pancreas	Pancrea
17	chr4:107104600-107140800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain
19	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:107107000-107149600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:107107200-107130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:107108800-107129600	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:107111800-107160200	Weak transcription	NHEK	skin
24	chr4:107112400-107129400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:107112400-107170400	Weak transcription	Thymus	Thymus
26	chr4:107112600-107129600	Weak transcription	Gastric	stomach
27	chr4:107113000-107150800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:107113000-107154800	Weak transcription	Brain Angular Gyrus	brain
29	chr4:107113200-107130800	Weak transcription	HSMM	muscle
30	chr4:107113400-107150200	Weak transcription	Osteobl	bone
31	chr4:107113600-107133400	Weak transcription	Fetal Lung	lung
32	chr4:107114400-107149200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr4:107114600-107127600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:107114600-107149600	Weak transcription	HSMMtube	muscle
35	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr4:107114800-107127400	Weak transcription	Adipose Nuclei	Adipose
37	chr4:107114800-107129200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:107114800-107129400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:107114800-107129400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:107114800-107129400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:107114800-107129400	Weak transcription	Fetal Thymus	thymus
42	chr4:107114800-107129600	Weak transcription	Primary B cells from cord blood	blood
43	chr4:107114800-107129600	Weak transcription	Left Ventricle	heart
44	chr4:107114800-107129600	Weak transcription	Ovary	ovary
45	chr4:107114800-107129800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:107114800-107129800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:107114800-107131400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:107114800-107133400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr4:107114800-107133400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr4:107114800-107133600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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