Variant report

Variant	rs556575255
Chromosome Location	chr6:126964776-126964777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr6:126964553-126964792	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:126964516-126964822	MCF-7	breast:	n/a	n/a
3	POLR2A	chr6:126964449-126964863	A549	lung:	n/a	n/a
4	POLR2A	chr6:126964621-126965129	GM12878	blood:	n/a	n/a
5	TAF1	chr6:126964537-126964841	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:126964727-126964777	HRPEpiC	eye:	n/a
2	chr6:126964727-126964777	BJ	skin:	n/a
3	chr6:126964727-126964777	MCF10A-Er-Src	breast:	n/a
4	chr6:126964727-126964777	HepG2	liver:	n/a
5	chr6:126964727-126964777	LNCaP	prostate:	n/a
6	chr6:126964727-126964777	HRE	kidney:	n/a
7	chr6:126964727-126964777	HIPEpiC	eye:	n/a
8	chr6:126964727-126964777	HEEpiC	esophagus:	n/a
9	chr6:126964727-126964777	Hepatocyte	liver:	n/a
10	chr6:126964727-126964777	HMEC	breast:	n/a
11	chr6:126964727-126964777	CMK	blood:	n/a
12	chr6:126964727-126964777	ovcar-3	ovarian:	n/a
13	chr6:126964727-126964777	HRCEpiC	kidney:	n/a
14	chr6:126964727-126964777	AG04449	skin:	fetal
15	chr6:126964727-126964777	ECC-1	luminal epithelium:	n/a
16	chr6:126964727-126964777	HEK293	kidney:	embryo
17	chr6:126964727-126964777	Hela-S3	cervix:	n/a
18	chr6:126964727-126964777	SK-N-SH_RA	brain:	n/a
19	chr6:126964727-126964777	SK-N-SH	brain:	n/a
20	chr6:126964727-126964777	SK-N-MC	brain:	n/a
21	chr6:126964727-126964777	PrEC	prostate:	n/a
22	chr6:126964727-126964777	ProgFib	skin:	n/a
23	chr6:126964727-126964777	NB4	blood:	n/a
24	chr6:126964727-126964777	GM12878	blood:	n/a
25	chr6:126964727-126964777	AG10803	skin:	n/a
26	chr6:126964727-126964777	HUVEC	blood vessel:	n/a
27	chr6:126964727-126964777	HAEpiC	amniotic membrane:	n/a
28	chr6:126964727-126964777	HCPEpiC	choroid plexus:	n/a
29	chr6:126964727-126964777	HCM	heart:	n/a
30	chr6:126964727-126964777	T-47D	breast:	n/a
31	chr6:126964727-126964777	NHDF-neo	bronchial:	n/a
32	chr6:126964727-126964777	NT2-D1	testis:	n/a
33	chr6:126964727-126964777	IMR90	lung:	fetal
34	chr6:126964727-126964777	HPAEpiC	pulmonary alveolar:	n/a
35	chr6:126964727-126964777	GM12892	blood:	n/a
36	chr6:126964727-126964777	AG09309	skin:	n/a
37	chr6:126964727-126964777	NH-A	brain:	n/a
38	chr6:126964727-126964777	AG09319	gingival:	n/a
39	chr6:126964727-126964777	Caco-2	colon:	n/a
40	chr6:126964727-126964777	GM12891	blood:	n/a
41	chr6:126964727-126964777	SKMC	muscle:	n/a
42	chr6:126964727-126964777	HL-60	blood:	n/a
43	chr6:126964727-126964777	SAEC	small airway:	n/a
44	chr6:126964727-126964777	H1-hESC	embryonic stem cell:	embryo
45	chr6:126964727-126964777	PFSK-1	brain:	n/a
46	chr6:126964727-126964777	Jurkat	blood:	n/a
47	chr6:126964727-126964777	NHBE	bronchial:	n/a
48	chr6:126964727-126964777	MCF-7	breast:	n/a
49	chr6:126964727-126964777	BE2_C	brain:	n/a
50	chr6:126964727-126964777	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
PRELID1P1	TF binding region
PRELID1P1	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021636	chr6:126792916-127022489	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1026498	chr6:126812609-127397240	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1024206	chr6:126873187-127475713	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv538438	chr6:126873187-127475713	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv830797	chr6:126923875-127100956	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv886637	chr6:126927717-126985351	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv970163	chr6:126963994-126967239	Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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