Variant report

Variant	rs55658078
Chromosome Location	chr11:108147594-108147595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108143540..108146436-chr11:108147074..108149154,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1800060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3092834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45613232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55900855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56219133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56815840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58937624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58939981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59582350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60723020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv898385	chr11:108123189-108165736	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
3	chr11:108096400-108156400	Weak transcription	NHLF	lung
4	chr11:108108400-108184800	Weak transcription	NHEK	skin
5	chr11:108108800-108147600	Weak transcription	Psoas Muscle	Psoas
6	chr11:108126000-108153600	Weak transcription	HUVEC	blood vessel
7	chr11:108126200-108157600	Weak transcription	HMEC	breast
8	chr11:108126800-108149200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:108129000-108148000	Weak transcription	Pancreas	Pancrea
10	chr11:108129000-108155400	Weak transcription	HSMMtube	muscle
11	chr11:108131800-108209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:108132200-108148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:108137400-108147800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:108137400-108148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:108137600-108148400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:108137600-108150600	Strong transcription	Fetal Thymus	thymus
17	chr11:108137800-108148200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:108137800-108149200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:108137800-108150000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:108137800-108150800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:108137800-108159400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:108137800-108160400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr11:108137800-108212000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:108138400-108209400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:108139000-108149400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:108139000-108150600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:108139200-108163400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:108139200-108208200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:108140200-108149400	Strong transcription	Placenta	Placenta
30	chr11:108140400-108148600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:108140800-108149200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:108141200-108181800	Weak transcription	Small Intestine	intestine
33	chr11:108141800-108163600	Strong transcription	Adipose Nuclei	Adipose
34	chr11:108142000-108147600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:108142000-108148600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:108142000-108149800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:108142200-108149600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:108142600-108155400	Weak transcription	Brain Germinal Matrix	brain
39	chr11:108143000-108175800	Weak transcription	Right Ventricle	heart
40	chr11:108143000-108186600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:108143800-108149400	Strong transcription	Liver	Liver
42	chr11:108143800-108154200	Weak transcription	K562	blood
43	chr11:108143800-108160400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:108143800-108175400	Weak transcription	Fetal Brain Male	brain
45	chr11:108144000-108148200	Weak transcription	GM12878-XiMat	blood
46	chr11:108144000-108149400	Weak transcription	HSMM	muscle
47	chr11:108144000-108151600	Weak transcription	NH-A	brain
48	chr11:108144000-108152000	Weak transcription	HepG2	liver
49	chr11:108144000-108160000	Weak transcription	NHDF-Ad	bronchial
50	chr11:108144000-108168200	Weak transcription	Hela-S3	cervix

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