Variant report

Variant	rs55658727
Chromosome Location	chr2:73564601-73564602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57552430	1.00[AMR][1000 genomes]
rs58093912	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58806616	1.00[AMR][1000 genomes]
rs72907330	1.00[AMR][1000 genomes]
rs72907345	1.00[AMR][1000 genomes]
rs72907399	1.00[AMR][1000 genomes]
rs72909305	1.00[AMR][1000 genomes]
rs72909337	1.00[AMR][1000 genomes]
rs72909340	1.00[AMR][1000 genomes]
rs72909365	1.00[AMR][1000 genomes]
rs72909371	1.00[AMR][1000 genomes]
rs72909376	1.00[AMR][1000 genomes]
rs72911361	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013190	chr2:73489679-73572643	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73564600-73564800	Flanking Active TSS	GM12878-XiMat	blood
2	chr2:73564600-73565200	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:73564600-73565800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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