Variant report

Variant	rs55660955
Chromosome Location	chr6:161658128-161658129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr6:161658038-161658154	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:161585978..161588627-chr6:161656198..161658945,2	K562	blood:
2	chr6:161494196..161496885-chr6:161657135..161659498,2	K562	blood:
3	chr6:161633305..161636291-chr6:161657076..161658603,2	K562	blood:
4	chr6:161656907..161658556-chr6:161664328..161666054,2	K562	blood:

Variant related genes	Relation type
AGPAT4	TF binding region
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6906489	1.00[ASN][1000 genomes]
rs73017498	1.00[ASN][1000 genomes]
rs73019305	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73782822	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv533149	chr6:161653240-161769727	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
4	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:161647200-161663200	Weak transcription	Thymus	Thymus
6	chr6:161648000-161660600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:161649400-161662800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
9	chr6:161650000-161662800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:161651000-161658800	Weak transcription	Esophagus	oesophagus
11	chr6:161651000-161663400	Weak transcription	Lung	lung
12	chr6:161651000-161677000	Weak transcription	Spleen	Spleen
13	chr6:161651200-161666000	Weak transcription	Primary T cells from cord blood	blood
14	chr6:161653200-161664200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:161653400-161659400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:161653600-161658200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:161653600-161660800	Weak transcription	Fetal Kidney	kidney
18	chr6:161653800-161658200	Enhancers	Brain Germinal Matrix	brain
19	chr6:161653800-161659600	Enhancers	Fetal Heart	heart
20	chr6:161653800-161693800	Weak transcription	Primary B cells from cord blood	blood
21	chr6:161654000-161664000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:161655200-161659600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:161655800-161658200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:161655800-161658800	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:161655800-161659400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:161655800-161663800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:161655800-161680400	Weak transcription	HMEC	breast
28	chr6:161656000-161658200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:161656000-161658200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:161656000-161659600	Weak transcription	NHEK	skin
31	chr6:161656000-161661200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:161656000-161663600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:161656000-161664200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:161656000-161664200	Weak transcription	NHDF-Ad	bronchial
35	chr6:161656000-161666200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:161656200-161658800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:161656200-161659200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:161656200-161660200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:161656200-161664200	Weak transcription	Placenta	Placenta
40	chr6:161656200-161664200	Weak transcription	NH-A	brain
41	chr6:161656200-161664400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:161656200-161664400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:161656200-161664400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:161656200-161665200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:161656200-161665800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:161656200-161675600	Weak transcription	NHLF	lung
47	chr6:161656400-161664200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:161656400-161664200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:161656800-161660400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:161656800-161660800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links