Variant report

Variant	rs556623054
Chromosome Location	chr15:72489199-72489200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72487407..72489902-chr15:72490450..72492521,2	K562	blood:
2	chr15:72488199..72491266-chr15:72491481..72494588,4	MCF-7	breast:
3	chr15:72488604..72491164-chr15:72493836..72495912,3	MCF-7	breast:
4	chr15:72481897..72484290-chr15:72488055..72489624,2	MCF-7	breast:
5	chr15:72487347..72489902-chr15:72491021..72493729,2	K562	blood:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
5	esv3409471	chr15:72488923-72491471	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72477000-72489400	Weak transcription	Right Atrium	heart
2	chr15:72485200-72489200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:72485200-72490400	Weak transcription	A549	lung
4	chr15:72485200-72490400	Weak transcription	HSMM	muscle
5	chr15:72487600-72493600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:72487800-72490400	Weak transcription	GM12878-XiMat	blood
7	chr15:72488000-72489200	Weak transcription	Esophagus	oesophagus
8	chr15:72488000-72489800	Weak transcription	Gastric	stomach
9	chr15:72488000-72490400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:72488000-72491000	Weak transcription	K562	blood
11	chr15:72488400-72490400	Weak transcription	HSMMtube	muscle
12	chr15:72488800-72489200	Bivalent Enhancer	Fetal Intestine Large	intestine
13	chr15:72488800-72489200	Enhancers	Hela-S3	cervix
14	chr15:72488800-72489600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr15:72488800-72489600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
16	chr15:72488800-72489800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:72488800-72490600	Weak transcription	Dnd41	blood
18	chr15:72489000-72489200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr15:72489000-72489200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:72489000-72489200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr15:72489000-72489200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:72489000-72489200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:72489000-72489200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:72489000-72489200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:72489000-72489200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
26	chr15:72489000-72489200	Enhancers	Brain Hippocampus Middle	brain
27	chr15:72489000-72489200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
28	chr15:72489000-72489200	Enhancers	NH-A	brain
29	chr15:72489000-72489400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:72489000-72489400	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr15:72489000-72489400	Enhancers	Brain Substantia Nigra	brain
32	chr15:72489000-72489400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
33	chr15:72489000-72489400	Bivalent Enhancer	Fetal Intestine Small	intestine
34	chr15:72489000-72489400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
35	chr15:72489000-72489600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:72489000-72489600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr15:72489000-72489600	Bivalent Enhancer	Fetal Stomach	stomach
38	chr15:72489000-72489800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
39	chr15:72489000-72489800	Flanking Active TSS	Placenta	Placenta
40	chr15:72489000-72489800	Flanking Active TSS	NHEK	skin
41	chr15:72489000-72490000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
42	chr15:72489000-72490000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr15:72489000-72490000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:72489000-72490000	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr15:72489000-72490000	Active TSS	Placenta Amnion	Placenta Amnion
46	chr15:72489000-72490200	Active TSS	Lung	lung
47	chr15:72489000-72490600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
48	chr15:72489000-72490600	Flanking Active TSS	HMEC	breast
49	chr15:72489000-72490800	Active TSS	H9 Cell Line	embryonic stem cell
50	chr15:72489000-72491000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin

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