Variant report

Variant	rs556623491
Chromosome Location	chr11:71674375-71674376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	esv3329098	chr11:71674342-71674702	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71658800-71677800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:71660400-71701200	Weak transcription	Gastric	stomach
3	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
4	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
5	chr11:71661400-71687600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:71663000-71689400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:71663000-71698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:71665800-71683400	Weak transcription	Psoas Muscle	Psoas
9	chr11:71666000-71694200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:71668800-71699000	Weak transcription	Right Ventricle	heart
11	chr11:71669800-71694400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:71670200-71686800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:71670600-71701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:71671000-71675000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:71671000-71676600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:71671000-71677600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:71671200-71674800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:71671200-71675400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:71671400-71675200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:71671400-71675800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:71671600-71674400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr11:71672000-71677200	Weak transcription	Lung	lung
23	chr11:71672200-71676600	Strong transcription	Dnd41	blood
24	chr11:71672200-71679200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:71672200-71688600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:71672200-71698800	Weak transcription	NHEK	skin
27	chr11:71672200-71701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
29	chr11:71672400-71682800	Weak transcription	HSMMtube	muscle
30	chr11:71672400-71701000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:71672400-71709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:71672600-71674400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:71672600-71674800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:71672600-71675600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:71672600-71675800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:71672600-71676200	Strong transcription	HSMM	muscle
37	chr11:71672600-71677200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:71672600-71680800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:71672600-71689400	Weak transcription	Brain Substantia Nigra	brain
40	chr11:71672600-71694400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:71672600-71694400	Weak transcription	Aorta	Aorta
42	chr11:71672600-71694600	Weak transcription	Esophagus	oesophagus
43	chr11:71672600-71698400	Weak transcription	Spleen	Spleen
44	chr11:71672600-71709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr11:71672800-71674400	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr11:71672800-71674400	Enhancers	Primary hematopoietic stem cells	blood
47	chr11:71672800-71674400	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr11:71672800-71675000	Genic enhancers	HUVEC	blood vessel
49	chr11:71672800-71694600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:71673000-71674400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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