Variant report

Variant	rs556624938
Chromosome Location	chr6:165062221-165062222
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv886919	chr6:164756364-165079834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv511924	chr6:164762179-165077399	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830861	chr6:165014475-165231204	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv525815	chr6:165017873-165262895	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1027965	chr6:165020269-165085048	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1024195	chr6:165045585-165089624	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv605234	chr6:165054409-165130872	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165061400-165063000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:165061800-165062400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:165061800-165062400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:165061800-165062400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:165061800-165062600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:165062000-165062400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:165062000-165062400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:165062000-165062400	Enhancers	Adipose Nuclei	Adipose
9	chr6:165062000-165062400	Enhancers	Brain Angular Gyrus	brain
10	chr6:165062000-165062400	Active TSS	Brain Anterior Caudate	brain
11	chr6:165062000-165062400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:165062000-165062600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:165062000-165062600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:165062000-165062600	Enhancers	Brain Germinal Matrix	brain
15	chr6:165062000-165062600	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr6:165062200-165062400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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