Variant report

Variant	rs55662923
Chromosome Location	chr9:101602995-101602996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101602137..101603976-chr9:101608820..101610859,2	K562	blood:
2	chr9:101601345..101603678-chr9:101836999..101839273,2	K562	blood:
3	chr9:101600728..101603637-chr9:101608735..101610970,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73652680	1.00[AFR][1000 genomes]
rs73655906	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv893617	chr9:101585992-101634716	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv825010	chr9:101587263-101630169	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101573000-101612800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:101576000-101605000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr9:101577800-101610600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101579200-101610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:101582000-101610600	Weak transcription	Aorta	Aorta
6	chr9:101583800-101610600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:101585000-101610600	Weak transcription	Brain Angular Gyrus	brain
8	chr9:101585000-101611000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:101586000-101610400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:101586800-101608000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:101586800-101610600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:101587800-101607200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:101588000-101610600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:101588200-101610800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:101588200-101610800	Weak transcription	Adipose Nuclei	Adipose
16	chr9:101588400-101604200	Weak transcription	Small Intestine	intestine
17	chr9:101588400-101609800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr9:101589200-101613800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:101589400-101610400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:101590200-101610000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr9:101592000-101603800	Strong transcription	Primary T cells from cord blood	blood
22	chr9:101592000-101603800	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr9:101592600-101603800	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:101595400-101603800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr9:101596000-101606000	Weak transcription	Right Ventricle	heart
26	chr9:101596000-101610600	Weak transcription	Stomach Mucosa	stomach
27	chr9:101596600-101610800	Weak transcription	NHLF	lung
28	chr9:101596800-101611000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:101597000-101603600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr9:101597400-101610600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:101597800-101603800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:101597800-101610600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:101597800-101610600	Weak transcription	Brain Substantia Nigra	brain
34	chr9:101598200-101605000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:101598600-101604800	Strong transcription	Fetal Intestine Large	intestine
36	chr9:101598800-101603600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:101598800-101610800	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:101599000-101610600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:101599200-101611000	Weak transcription	NHDF-Ad	bronchial
40	chr9:101599400-101606200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:101600000-101607000	Weak transcription	Esophagus	oesophagus
42	chr9:101600600-101614000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:101600800-101609600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:101601000-101607000	Weak transcription	Gastric	stomach
45	chr9:101601000-101608000	Weak transcription	Thymus	Thymus
46	chr9:101601200-101610600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:101601400-101607200	Weak transcription	Colonic Mucosa	Colon
48	chr9:101601400-101608000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr9:101601400-101610400	Weak transcription	Colon Smooth Muscle	Colon
50	chr9:101601400-101610600	Weak transcription	Brain Hippocampus Middle	brain

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