Variant report

Variant	rs556653865
Chromosome Location	chr5:49433127-49433128
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334856	chr5:49405642-49442693	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
2	esv3353509	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3365495	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv3403552	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3451841	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	esv997367	chr5:49405763-49441191	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv17894	chr5:49405763-49442098	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
8	esv19415	chr5:49405763-49485157	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv820439	chr5:49405763-49552643	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv15107	chr5:49405763-49562327	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv6051	chr5:49405841-49436199	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv598085	chr5:49406720-49439390	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv3382902	chr5:49407431-49439369	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
14	nsv598086	chr5:49409485-49437600	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
15	nsv598087	chr5:49409485-49441601	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
16	esv3500810	chr5:49414412-49435207	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
17	esv3500811	chr5:49414412-49435207	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
18	nsv598088	chr5:49420166-49441715	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	n/a
19	esv2760950	chr5:49432831-49624358	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:49431800-49434800	Weak transcription	Brain Germinal Matrix	brain
2	chr5:49432000-49434600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:49432000-49434600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:49432000-49434800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:49432000-49434800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:49432000-49434800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:49432000-49434800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:49432000-49434800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:49432000-49434800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:49432000-49434800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:49432000-49434800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:49432000-49434800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:49432000-49434800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:49432000-49434800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:49432000-49434800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr5:49432000-49434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:49432000-49434800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:49432000-49434800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:49432000-49434800	Weak transcription	Adipose Nuclei	Adipose
20	chr5:49432000-49434800	Weak transcription	Aorta	Aorta
21	chr5:49432000-49434800	Weak transcription	Liver	Liver
22	chr5:49432000-49434800	Weak transcription	Brain Angular Gyrus	brain
23	chr5:49432000-49434800	Weak transcription	Brain Anterior Caudate	brain
24	chr5:49432000-49434800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:49432000-49434800	Weak transcription	Brain Hippocampus Middle	brain
26	chr5:49432000-49434800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:49432000-49434800	Weak transcription	Brain Substantia Nigra	brain
28	chr5:49432000-49434800	Weak transcription	Colonic Mucosa	Colon
29	chr5:49432000-49434800	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:49432000-49434800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr5:49432000-49434800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr5:49432000-49434800	Weak transcription	Fetal Brain Male	brain
33	chr5:49432000-49434800	Weak transcription	Fetal Heart	heart
34	chr5:49432000-49434800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:49432000-49434800	Weak transcription	Left Ventricle	heart
36	chr5:49432000-49434800	Weak transcription	Psoas Muscle	Psoas
37	chr5:49432000-49434800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr5:49432000-49434800	Weak transcription	Right Ventricle	heart
39	chr5:49432000-49434800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:49432000-49434800	Weak transcription	Small Intestine	intestine
41	chr5:49432000-49434800	Weak transcription	Stomach Mucosa	stomach
42	chr5:49432000-49434800	Weak transcription	Thymus	Thymus
43	chr5:49432000-49437000	Weak transcription	Ovary	ovary
44	chr5:49432800-49434800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:49432800-49434800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:49432800-49434800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr5:49432800-49434800	Weak transcription	Fetal Kidney	kidney
48	chr5:49432800-49434800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links