Variant report

Variant	rs55668486
Chromosome Location	chr14:78663141-78663142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17754610	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4312244	1.00[EUR][1000 genomes]
rs66600803	0.93[EUR][1000 genomes]
rs72683766	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72683784	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72685765	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78659200-78666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78659600-78664200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78661000-78666000	Weak transcription	Thymus	Thymus
4	chr14:78661400-78664800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:78661600-78665400	Weak transcription	Fetal Thymus	thymus
6	chr14:78662400-78663400	Enhancers	Fetal Brain Female	brain
7	chr14:78662800-78664000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:78662800-78667800	Weak transcription	Brain Angular Gyrus	brain
9	chr14:78663000-78663600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:78663000-78663600	Flanking Active TSS	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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