Variant report

Variant	rs55669064
Chromosome Location	chr1:175801016-175801017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11806519	0.85[EUR][1000 genomes]
rs12561903	0.88[EUR][1000 genomes]
rs12561921	0.88[EUR][1000 genomes]
rs12567703	0.89[EUR][1000 genomes]
rs16849181	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175799200-175801200	Enhancers	Hela-S3	cervix
2	chr1:175799800-175804400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:175799800-175804800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:175800000-175801600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:175800000-175802000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:175800200-175802200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:175800200-175802200	Weak transcription	Fetal Intestine Large	intestine
8	chr1:175800200-175804600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:175800400-175801200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:175800400-175802200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:175800800-175801800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:175800800-175802800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:175801000-175801200	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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