Variant report

Variant	rs55669825
Chromosome Location	chr11:75266359-75266360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75254633..75256434-chr11:75264986..75267807,2	K562	blood:
2	chr11:75246624..75248385-chr11:75263856..75266682,2	K562	blood:
3	chr11:75259014..75260783-chr11:75264965..75266656,2	K562	blood:
4	chr11:75099655..75101475-chr11:75264978..75266737,2	K562	blood:
5	chr11:75258371..75261326-chr11:75265585..75267685,5	MCF-7	breast:
6	chr11:75153583..75155202-chr11:75265836..75267387,2	K562	blood:

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10899093	0.84[ASN][1000 genomes]
rs10899094	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1612604	0.84[ASN][1000 genomes]
rs1783553	0.83[ASN][1000 genomes]
rs4945015	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs598186	0.80[AMR][1000 genomes]
rs602516	0.81[ASN][1000 genomes]
rs617639	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs659453	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs663660	0.92[ASN][1000 genomes]
rs680988	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs687096	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75259200-75268000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:75263800-75266400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:75263800-75266400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:75263800-75266600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:75263800-75268800	Weak transcription	Fetal Brain Female	brain
6	chr11:75263800-75272600	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:75263800-75272600	Enhancers	Fetal Muscle Leg	muscle
8	chr11:75264000-75266800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:75264400-75266400	Enhancers	Lung	lung
10	chr11:75264400-75266600	Enhancers	Left Ventricle	heart
11	chr11:75264400-75266800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:75264600-75266400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:75264600-75266600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:75264600-75266600	Enhancers	Placenta	Placenta
15	chr11:75264800-75266600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:75264800-75266600	Enhancers	Colonic Mucosa	Colon
17	chr11:75264800-75266600	Enhancers	Fetal Intestine Large	intestine
18	chr11:75264800-75266600	Enhancers	K562	blood
19	chr11:75264800-75266600	Enhancers	NH-A	brain
20	chr11:75264800-75266800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:75264800-75266800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr11:75265000-75266600	Enhancers	Fetal Thymus	thymus
23	chr11:75265000-75266600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:75265000-75266600	Enhancers	HSMMtube	muscle
25	chr11:75265200-75266400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:75265200-75266400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:75265200-75266400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:75265200-75266600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr11:75265200-75266600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:75265200-75266600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr11:75265200-75268600	Weak transcription	Aorta	Aorta
32	chr11:75265400-75266400	Enhancers	Spleen	Spleen
33	chr11:75265400-75268600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:75265600-75266400	Enhancers	HepG2	liver
35	chr11:75265600-75266600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:75265600-75266600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:75265600-75268400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:75265600-75270000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:75265800-75266400	Enhancers	H9 Cell Line	embryonic stem cell
40	chr11:75265800-75266400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:75265800-75266400	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr11:75265800-75266400	Enhancers	Placenta Amnion	Placenta Amnion
43	chr11:75265800-75266400	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr11:75265800-75266400	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr11:75265800-75266400	Flanking Active TSS	HSMM	muscle
46	chr11:75265800-75266400	Flanking Active TSS	NHLF	lung
47	chr11:75265800-75266600	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr11:75265800-75266600	Enhancers	Right Atrium	heart
49	chr11:75265800-75268400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:75266000-75266400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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