Variant report

Variant	rs556705828
Chromosome Location	chr7:150928032-150928033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:150927865-150928065	SH-SY5Y	brain:	n/a	n/a
2	MXI1	chr7:150927964-150931392	SK-N-SH	brain:	n/a	chr7:150929532-150929547
3	GATA1	chr7:150928031-150931664	K562	blood:	n/a	chr7:150930682-150930703 chr7:150930685-150930701

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150904819..150907851-chr7:150927889..150929495,3	MCF-7	breast:
2	chr7:150926542..150929326-chr7:151037923..151042316,3	K562	blood:

Variant related genes	Relation type
ABCF2	TF binding region
CHPF2	TF binding region
ENSG00000013374	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv435860	chr7:150923672-150930735	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv889488	chr7:150926775-150955765	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150924800-150928800	Weak transcription	Spleen	Spleen
2	chr7:150925000-150929200	Weak transcription	Gastric	stomach
3	chr7:150925200-150928600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:150925200-150928800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:150925200-150928800	Weak transcription	Esophagus	oesophagus
6	chr7:150925200-150929000	Weak transcription	Right Atrium	heart
7	chr7:150925400-150928400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:150925400-150928600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:150925400-150928600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:150925400-150928600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:150925400-150928600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:150925400-150928600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:150925400-150928600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:150925400-150928600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:150925400-150928600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:150925400-150928600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:150925400-150928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:150925400-150928600	Weak transcription	Brain Germinal Matrix	brain
19	chr7:150925400-150928600	Weak transcription	Brain Substantia Nigra	brain
20	chr7:150925400-150928600	Weak transcription	Fetal Brain Female	brain
21	chr7:150925400-150928600	Weak transcription	Left Ventricle	heart
22	chr7:150925400-150928600	Weak transcription	Right Ventricle	heart
23	chr7:150925400-150928600	Weak transcription	GM12878-XiMat	blood
24	chr7:150925400-150928800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:150925400-150928800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:150925400-150928800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:150925400-150928800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:150925400-150928800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr7:150925400-150928800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:150925400-150928800	Weak transcription	Primary T cells from cord blood	blood
31	chr7:150925400-150928800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr7:150925400-150928800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:150925400-150928800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:150925400-150928800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:150925400-150928800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr7:150925400-150928800	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:150925400-150928800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:150925400-150928800	Weak transcription	Fetal Brain Male	brain
39	chr7:150925400-150928800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr7:150925400-150928800	Weak transcription	Lung	lung
41	chr7:150925400-150928800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:150925400-150928800	Weak transcription	Small Intestine	intestine
43	chr7:150925400-150929000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:150925400-150929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:150925400-150929000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr7:150925400-150929000	Weak transcription	Fetal Muscle Leg	muscle
47	chr7:150925400-150929000	Weak transcription	Pancreas	Pancrea
48	chr7:150925400-150929000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr7:150925400-150929000	Weak transcription	Psoas Muscle	Psoas
50	chr7:150925400-150929000	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links