Variant report

Variant	rs556735458
Chromosome Location	chr13:30622337-30622338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30617504..30619162-chr13:30621081..30623948,2	MCF-7	breast:
2	chr13:30621873..30623731-chr13:30625663..30627345,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30612000-30625600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:30614800-30625800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:30619400-30625600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:30619800-30622400	Enhancers	HSMMtube	muscle
5	chr13:30619800-30622400	Enhancers	Osteobl	bone
6	chr13:30620000-30622400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:30620200-30626600	Weak transcription	Stomach Mucosa	stomach
8	chr13:30620600-30623600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:30620800-30623800	Weak transcription	NHEK	skin
10	chr13:30620800-30625800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:30621000-30622400	Enhancers	Primary T cells from cord blood	blood
12	chr13:30621000-30622400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:30621000-30623600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr13:30621200-30622400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:30621200-30622400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr13:30621200-30622600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr13:30621200-30623800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:30621400-30622400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:30621400-30622400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:30621600-30622400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr13:30621600-30622400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr13:30621600-30622400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr13:30621600-30622400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr13:30621600-30622400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:30621600-30622400	Enhancers	Small Intestine	intestine
26	chr13:30621600-30624000	Weak transcription	NH-A	brain
27	chr13:30621800-30622400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr13:30622000-30623000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr13:30622000-30625800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr13:30622200-30622600	Weak transcription	Fetal Intestine Small	intestine
31	chr13:30622200-30625800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr13:30622200-30625800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr13:30622200-30626000	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links