Variant report

Variant	rs556750815
Chromosome Location	chr6:72196076-72196077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv1025409	chr6:72175998-72205044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3451765	chr6:72195766-72196238	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72189200-72199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:72189600-72199800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:72190400-72199000	Weak transcription	Hela-S3	cervix
4	chr6:72191400-72200400	Weak transcription	Psoas Muscle	Psoas
5	chr6:72192000-72200600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:72192400-72199400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:72193800-72197600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:72193800-72197800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:72194800-72199000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:72195600-72196800	Enhancers	HSMM	muscle
12	chr6:72195800-72196200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:72195800-72196400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:72195800-72196800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:72195800-72196800	Enhancers	HSMMtube	muscle
16	chr6:72196000-72196400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:72196000-72196400	Enhancers	Aorta	Aorta
18	chr6:72196000-72196400	Enhancers	NHDF-Ad	bronchial
19	chr6:72196000-72196400	Enhancers	NHEK	skin
20	chr6:72196000-72196600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:72196000-72196600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:72196000-72196600	Enhancers	NH-A	brain
23	chr6:72196000-72196800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:72196000-72196800	Enhancers	NHLF	lung
25	chr6:72196000-72196800	Enhancers	Osteobl	bone

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